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4DW7
Biol. Unit 1
Info
Asym.Unit (69 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ACTIVE-SITE MUTANT OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH A CPU DINUCLEOTIDE
Authors
:
T. Krey, F. Bontems, C. Vonrhein, M. -C. Vaney, G. Bricogne, T. Ruemenap
Date
:
24 Feb 12 (Deposition) - 23 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.08
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Virus Glycoprotein, T2 Ribonuclease, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Krey, F. Bontems, C. Vonrhein, M. C. Vaney, G. Bricogne, T. Rumenapf F. A. Rey
Crystal Structure Of The Pestivirus Envelope Glycoprotein E(Rns) And Mechanistic Analysis Of Its Ribonuclease Activity.
Structure V. 20 862 2012
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: CYTIDINE-5'-MONOPHOSPHATE (Ca)
2b: CYTIDINE-5'-MONOPHOSPHATE (Cb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
6a: URIDINE-5'-MONOPHOSPHATE (Ua)
6b: URIDINE-5'-MONOPHOSPHATE (Ub)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
C
-1
Ligand/Ion
CYTIDINE-5'-MONOPHOSPHATE
3
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
3
Ligand/Ion
SULFATE ION
6
U
-1
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: CC2 (SOFTWARE)
16: CC4 (SOFTWARE)
17: CC5 (SOFTWARE)
18: CC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:4 , PRO A:36 , ASN A:85 , LEU A:95 , NAG A:1102
BINDING SITE FOR RESIDUE NAG A 1101
02
AC2
SOFTWARE
ASN A:85 , TRP A:86 , TYR A:87 , NAG A:1101 , BMA A:1103
BINDING SITE FOR RESIDUE NAG A 1102
03
AC3
SOFTWARE
TRP A:86 , ASN A:88 , NAG A:1102 , BMA A:1104 , HOH A:1208
BINDING SITE FOR RESIDUE BMA A 1103
04
AC4
SOFTWARE
ASN A:88 , GLU A:90 , PRO A:91 , BMA A:1103 , BMA A:1105
BINDING SITE FOR RESIDUE BMA A 1104
05
AC5
SOFTWARE
BMA A:1104 , HOH A:1208 , HIS B:57
BINDING SITE FOR RESIDUE BMA A 1105
06
AC6
SOFTWARE
ASN A:67
BINDING SITE FOR RESIDUE NAG A 1106
07
AC7
SOFTWARE
LEU A:94 , ASN A:97 , GLU B:90
BINDING SITE FOR RESIDUE NAG A 1107
08
AC8
SOFTWARE
LYS A:98 , THR A:99 , ASN A:102 , NAG A:1109
BINDING SITE FOR RESIDUE NAG A 1108
09
AC9
SOFTWARE
NAG A:1108 , HOH A:1206
BINDING SITE FOR RESIDUE NAG A 1109
10
BC1
SOFTWARE
ASN A:9 , GLN A:19 , LYS A:32 , ALA A:62 , LEU A:73 , GLN A:129 , C A:1111
BINDING SITE FOR RESIDUE U A 1110
11
BC2
SOFTWARE
ALA A:62 , ARG A:72 , U A:1110 , SO4 A:1113
BINDING SITE FOR RESIDUE C A 1111
12
BC3
SOFTWARE
ARG A:72 , ARG A:75
BINDING SITE FOR RESIDUE SO4 A 1112
13
BC4
SOFTWARE
LYS A:65 , ARG A:72 , HIS A:76 , ASN A:79 , C A:1111 , HOH A:1202
BINDING SITE FOR RESIDUE SO4 A 1113
14
BC5
SOFTWARE
LYS A:32 , TRP A:35 , HIS A:76 , GLU A:77 , LYS A:80 , HIS A:81
BINDING SITE FOR RESIDUE SO4 A 1114
15
CC2
SOFTWARE
HIS A:57 , BMA B:205
BINDING SITE FOR RESIDUE BMA B 206
16
CC4
SOFTWARE
GLU A:90 , ASN B:97 , ALA B:101 , NAG B:209
BINDING SITE FOR RESIDUE NAG B 208
17
CC5
SOFTWARE
LYS A:98 , NAG B:208
BINDING SITE FOR RESIDUE NAG B 209
18
CC6
SOFTWARE
LYS A:142 , ASN B:9 , ILE B:18 , GLN B:19 , LYS B:32 , ALA B:62 , C B:213
BINDING SITE FOR RESIDUE U B 210
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_T2_2 (A:73-84)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_T2_2
PS00531
Ribonuclease T2 family histidine active site 2.
POLG_BVDVC
341-352
1
A:73-84
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (69 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (32 KB)
Header - Biol.Unit 2
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