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4DW5
Biol. Unit 2
Info
Asym.Unit (78 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (35 KB)
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Title
:
CRYSTAL STRUCTURE OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH A NON-CLEAVABLE CPU DINUCLEOTIDE
Authors
:
T. Krey, F. Bontems, C. Vonrhein, M. -C. Vaney, G. Bricogne, T. Ruemenap
Date
:
24 Feb 12 (Deposition) - 23 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.21
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Virus Glycoprotein, T2 Ribonuclease, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Krey, F. Bontems, C. Vonrhein, M. C. Vaney, G. Bricogne, T. Rumenapf F. A. Rey
Crystal Structure Of The Pestivirus Envelope Glycoprotein E(Rns) And Mechanistic Analysis Of Its Ribonuclease Activity.
Structure V. 20 862 2012
[
close entry info
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
2g: BETA-D-MANNOSE (BMAg)
2h: BETA-D-MANNOSE (BMAh)
3a: O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOP... (CSQa)
4a: O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOP... (CSVa)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
7g: SULFATE ION (SO4g)
8a: URIDINE-5'-MONOPHOSPHATE (Ua)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
-1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
BMA
4
Ligand/Ion
BETA-D-MANNOSE
3
CSQ
-1
Ligand/Ion
O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}HYDROGEN (R)-PHOSPHOROTHIOATE
4
CSV
-1
Ligand/Ion
O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}HYDROGEN (S)-PHOSPHOROTHIOATE
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
4
Ligand/Ion
SULFATE ION
8
U
-1
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
[
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]
Sites
(20, 20)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC9 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC3 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC5 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC4 (SOFTWARE)
16: DC5 (SOFTWARE)
17: DC6 (SOFTWARE)
18: DC7 (SOFTWARE)
19: DC8 (SOFTWARE)
20: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
BMA A:1105 , HIS B:57
BINDING SITE FOR RESIDUE BMA A 1106
02
AC9
SOFTWARE
LEU A:94 , ASN A:97 , NAG A:1110 , HOH A:1230 , HOH A:1265 , HOH A:1276 , GLU B:90 , LEU B:94
BINDING SITE FOR RESIDUE NAG A 1109
03
CC1
SOFTWARE
HIS A:46 , THR A:49 , THR A:51 , GLU A:52 , HOH A:1262 , THR B:49 , THR B:51 , GLU B:52 , SO4 B:1115 , HOH B:1218
BINDING SITE FOR RESIDUE 1PE A 1119
04
CC2
SOFTWARE
ASN B:4 , PRO B:36 , ASN B:85 , TRP B:86 , LEU B:95 , NAG B:1102 , HOH B:1205 , HOH B:1224
BINDING SITE FOR RESIDUE NAG B 1101
05
CC3
SOFTWARE
ASN B:85 , TRP B:86 , TYR B:87 , PRO B:91 , NAG B:1101 , BMA B:1103 , BMA B:1106 , HOH B:1205
BINDING SITE FOR RESIDUE NAG B 1102
06
CC4
SOFTWARE
TRP B:86 , ASN B:88 , NAG B:1102 , MAN B:1104 , BMA B:1105
BINDING SITE FOR RESIDUE BMA B 1103
07
CC5
SOFTWARE
TYR B:87 , BMA B:1103 , BMA B:1106
BINDING SITE FOR RESIDUE MAN B 1104
08
CC6
SOFTWARE
GLU B:90 , PRO B:91 , BMA B:1103 , BMA B:1107 , HOH B:1259
BINDING SITE FOR RESIDUE BMA B 1105
09
CC7
SOFTWARE
NAG B:1102 , MAN B:1104
BINDING SITE FOR RESIDUE BMA B 1106
10
CC8
SOFTWARE
HIS A:57 , BMA B:1105 , HOH B:1271
BINDING SITE FOR RESIDUE BMA B 1107
11
CC9
SOFTWARE
GLU A:90 , LEU A:94 , ALA B:55 , HIS B:57 , ASN B:97 , NAG B:1109 , HOH B:1208
BINDING SITE FOR RESIDUE NAG B 1108
12
DC1
SOFTWARE
NAG B:1108
BINDING SITE FOR RESIDUE NAG B 1109
13
DC2
SOFTWARE
GLY B:26 , ASN B:28 , ALA B:149 , ILE B:151 , HOH B:1250 , HOH B:1252
BINDING SITE FOR RESIDUE NAG B 1110
14
DC3
SOFTWARE
ASN B:13 , ARG B:20 , HOH B:1258
BINDING SITE FOR RESIDUE NAG B 1111
15
DC4
SOFTWARE
LYS B:98 , THR B:99 , ASN B:102 , GLN B:154
BINDING SITE FOR RESIDUE NAG B 1112
16
DC5
SOFTWARE
HIS B:32 , TRP B:35 , HIS B:76 , GLU B:77 , LYS B:80 , HIS B:81 , HOH B:1228 , HOH B:1238 , HOH B:1239
BINDING SITE FOR RESIDUE SO4 B 1113
17
DC6
SOFTWARE
HIS B:76 , ASN B:79 , HOH B:1269 , HOH B:1279
BINDING SITE FOR RESIDUE SO4 B 1114
18
DC7
SOFTWARE
1PE A:1119 , THR B:49 , ASP B:50 , THR B:51 , HOH B:1234
BINDING SITE FOR RESIDUE SO4 B 1115
19
DC8
SOFTWARE
ASN B:9 , GLN B:19 , HIS B:32 , ALA B:62 , GLN B:129
BINDING SITE FOR RESIDUE U B 1116
20
DC9
SOFTWARE
ARG A:120 , LYS A:141 , THR B:138 , GLY B:139
BINDING SITE FOR RESIDUE SO4 B 1117
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_T2_2 (B:73-84)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_T2_2
PS00531
Ribonuclease T2 family histidine active site 2.
POLG_BVDVC
341-352
1
-
B:73-84
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein & NOT Site
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Chain B
Asymmetric Unit 1
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