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Asym. Unit
Info
Asym.Unit (249 KB)
Biol.Unit 1 (122 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CLADE A/E 93TH057 HIV-1 GP120 CORE IN COMPLEX WITH MAE-II-167
Authors
:
Y. D. Kwon, P. D. Kwong
Date
:
23 Feb 12 (Deposition) - 27 Feb 13 (Release) - 31 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hiv-1 Gp120, Small Molecule Inhibitor, Cd4 Binding Site, Mae-Ii-167, Viral Protein-Transcription Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. D. Kwon, J. M. Lalonde, Y. Yang, M. A. Elban, A. Sugawara, J. R. Courter, D. M. Jones, A. B. Smith, A. K. Debnath, P. D. Kwong
Crystal Structures Of Hiv-1 Gp120 Envelope Glycoprotein In Complex With Nbd Analogues That Target The Cd4-Binding Site
Plos One V. 9 85940 2014
[
close entry info
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: N-(4-CHLORO-3-FLUOROPHENYL)-N'-[(3... (0M4a)
1b: N-(4-CHLORO-3-FLUOROPHENYL)-N'-[(3... (0M4b)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0M4
2
Ligand/Ion
N-(4-CHLORO-3-FLUOROPHENYL)-N'-[(3AS,6AS)-HEXAHYDROCYCLOPENTA[C]PYRROL-3A(1H)-YLMETHYL]ETHANEDIAMIDE
2
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:52 , ALA A:73 , GLN A:103 , ASP A:107 , TYR A:217 , HOH A:609 , HOH A:662 , HOH A:688
BINDING SITE FOR RESIDUE EPE A 511
02
AC2
SOFTWARE
VAL A:255 , SER A:256 , THR A:257 , ASP A:368 , GLU A:370 , ILE A:371 , SER A:375 , PHE A:376 , ILE A:424 , ASN A:425 , MET A:426 , TRP A:427 , GLY A:473
BINDING SITE FOR RESIDUE 0M4 A 512
03
AC3
SOFTWARE
LEU B:52 , CYS B:54 , ALA B:73 , GLN B:103 , ASP B:107 , TYR B:217 , HOH B:633
BINDING SITE FOR RESIDUE EPE B 511
04
AC4
SOFTWARE
VAL B:255 , SER B:256 , THR B:257 , ASP B:368 , GLU B:370 , ILE B:371 , SER B:375 , PHE B:376 , ASN B:425 , MET B:426 , TRP B:427 , GLY B:473 , HOH B:665
BINDING SITE FOR RESIDUE 0M4 B 512
05
AC5
SOFTWARE
ASN A:234 , THR A:236 , ILE A:272 , HIS A:352 , HOH A:694
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 234
06
AC6
SOFTWARE
LYS A:231 , LYS A:240 , ASN A:241
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 241
07
AC7
SOFTWARE
LEU A:261 , ASN A:262 , CYS A:445 , VAL A:446 , SER A:447 , NAG A:510 , HOH A:610 , HOH A:641 , HOH A:642 , HOH A:655 , HOH A:672
BINDING SITE FOR MONO-SACCHARIDE NAG A 503 BOUND TO ASN A 262
08
AC8
SOFTWARE
ASN A:276 , THR A:278 , ASN A:279 , HIS B:61
BINDING SITE FOR MONO-SACCHARIDE NAG A 504 BOUND TO ASN A 276
09
AC9
SOFTWARE
GLU A:269 , ILE A:270 , ASN A:289
BINDING SITE FOR MONO-SACCHARIDE NAG A 505 BOUND TO ASN A 289
10
BC1
SOFTWARE
ASN A:295 , GLU A:332
BINDING SITE FOR MONO-SACCHARIDE NAG A 506 BOUND TO ASN A 295
11
BC2
SOFTWARE
ASN A:334 , THR A:336 , LYS A:337 , HOH A:750
BINDING SITE FOR MONO-SACCHARIDE NAG A 507 BOUND TO ASN A 334
12
BC3
SOFTWARE
ASN A:354 , ASN A:355 , HOH A:629 , LYS B:252 , HOH B:634
BINDING SITE FOR MONO-SACCHARIDE NAG A 508 BOUND TO ASN A 355
13
BC4
SOFTWARE
ASN A:386 , THR A:388 , HOH A:675
BINDING SITE FOR MONO-SACCHARIDE NAG A 509 BOUND TO ASN A 386
14
BC5
SOFTWARE
LYS A:252 , SER A:291 , ASN A:448 , NAG A:503
BINDING SITE FOR MONO-SACCHARIDE NAG A 510 BOUND TO ASN A 448
15
BC6
SOFTWARE
ASN B:234 , THR B:236 , ILE B:272
BINDING SITE FOR MONO-SACCHARIDE NAG B 501 BOUND TO ASN B 234
16
BC7
SOFTWARE
ASP B:230 , LYS B:231 , ASN B:241
BINDING SITE FOR MONO-SACCHARIDE NAG B 502 BOUND TO ASN B 241
17
BC8
SOFTWARE
ASN A:354 , ASN A:355 , ASN B:262 , ARG B:379 , CYS B:445 , VAL B:446 , SER B:447 , NAG B:510 , HOH B:602 , HOH B:605 , HOH B:607
BINDING SITE FOR MONO-SACCHARIDE NAG B 503 BOUND TO ASN B 262
18
BC9
SOFTWARE
ASN B:276 , THR B:278 , ASN B:279
BINDING SITE FOR MONO-SACCHARIDE NAG B 504 BOUND TO ASN B 276
19
CC1
SOFTWARE
GLU B:268 , GLU B:269 , ILE B:270 , ASN B:289
BINDING SITE FOR MONO-SACCHARIDE NAG B 505 BOUND TO ASN B 289
20
CC2
SOFTWARE
ASN B:295 , TYR B:330 , GLU B:332
BINDING SITE FOR MONO-SACCHARIDE NAG B 506 BOUND TO ASN B 295
21
CC3
SOFTWARE
ASN B:334 , THR B:336 , LYS B:337
BINDING SITE FOR MONO-SACCHARIDE NAG B 507 BOUND TO ASN B 334
22
CC4
SOFTWARE
ASN B:355
BINDING SITE FOR MONO-SACCHARIDE NAG B 508 BOUND TO ASN B 355
23
CC5
SOFTWARE
ASN B:386 , THR B:388 , HOH B:659
BINDING SITE FOR MONO-SACCHARIDE NAG B 509 BOUND TO ASN B 386
24
CC6
SOFTWARE
ASN B:262 , ASN B:448 , NAG B:503 , HOH B:613
BINDING SITE FOR MONO-SACCHARIDE NAG B 510 BOUND TO ASN B 448
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Info
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (249 KB)
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Biol.Unit 1 (122 KB)
Header - Biol.Unit 1
Biol.Unit 2 (122 KB)
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