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4DVL
Asym. Unit
Info
Asym.Unit (71 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH 2'-3'-CYCLO-UMP
Authors
:
T. Krey, F. Bontems, C. Vonrhein, M. -C. Vaney, G. Bricogne, T. Ruemenap
Date
:
23 Feb 12 (Deposition) - 23 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Virus Glycoprotein, T2 Ribonuclease, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Krey, F. Bontems, C. Vonrhein, M. C. Vaney, G. Bricogne, T. Rumenapf F. A. Rey
Crystal Structure Of The Pestivirus Envelope Glycoprotein E(Rns) And Mechanistic Analysis Of Its Ribonuclease Activity.
Structure V. 20 862 2012
[
close entry info
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Hetero Components
(5, 31)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: 1-[(2S,3AS,4S,6R,6AR)-2-HYDROXY-6-... (JKMa)
2b: 1-[(2S,3AS,4S,6R,6AR)-2-HYDROXY-6-... (JKMb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
5
Ligand/Ion
BETA-D-MANNOSE
2
JKM
2
Ligand/Ion
1-[(2S,3AS,4S,6R,6AR)-2-HYDROXY-6-(HYDROXYMETHYL)-2-OXIDOTETRAHYDROFURO[3,4-D][1,3,2]DIOXAPHOSPHOL-4-YL]PYRIMIDINE-2,4(1H,3H)-DIONE
3
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:4 , PRO A:36 , ASN A:85 , TRP A:86 , NAG A:1102
BINDING SITE FOR RESIDUE NAG A 1101
02
AC2
SOFTWARE
ASN A:85 , TRP A:86 , TYR A:87 , NAG A:1101 , BMA A:1103 , BMA A:1104
BINDING SITE FOR RESIDUE NAG A 1102
03
AC3
SOFTWARE
TRP A:86 , TYR A:87 , ASN A:88 , NAG A:1102 , BMA A:1104 , MAN A:1105
BINDING SITE FOR RESIDUE BMA A 1103
04
AC4
SOFTWARE
TYR A:87 , NAG A:1102 , BMA A:1103
BINDING SITE FOR RESIDUE BMA A 1104
05
AC5
SOFTWARE
ASN A:88 , GLU A:90 , PRO A:91 , BMA A:1103
BINDING SITE FOR RESIDUE MAN A 1105
06
AC6
SOFTWARE
GLY A:26 , ASN A:28 , THR A:104 , ALA A:149
BINDING SITE FOR RESIDUE NAG A 1106
07
AC7
SOFTWARE
ASN A:97 , HOH A:1204 , GLU B:90 , LEU B:94
BINDING SITE FOR RESIDUE NAG A 1107
08
AC8
SOFTWARE
VAL A:43 , LEU A:95 , THR A:99 , ASN A:102 , NAG A:1109
BINDING SITE FOR RESIDUE NAG A 1108
09
AC9
SOFTWARE
ASN A:79 , NAG A:1108 , MAN A:1110
BINDING SITE FOR RESIDUE NAG A 1109
10
BC1
SOFTWARE
ARG A:72 , HIS A:76 , ASN A:79 , NAG A:1109 , HOH A:1218
BINDING SITE FOR RESIDUE MAN A 1110
11
BC2
SOFTWARE
ASN A:13 , NAG A:1112 , HOH A:1208 , ARG B:25 , GLY B:26
BINDING SITE FOR RESIDUE NAG A 1111
12
BC3
SOFTWARE
NAG A:1111 , BMA A:1113 , ARG B:25 , VAL B:27
BINDING SITE FOR RESIDUE NAG A 1112
13
BC4
SOFTWARE
NAG A:1112 , MAN A:1114 , THR B:69
BINDING SITE FOR RESIDUE BMA A 1113
14
BC5
SOFTWARE
BMA A:1113 , HIS B:57 , GLY B:58
BINDING SITE FOR RESIDUE MAN A 1114
15
BC6
SOFTWARE
THR A:49 , ASP A:50 , THR A:51
BINDING SITE FOR RESIDUE SO4 A 1115
16
BC7
SOFTWARE
HIS A:32 , HIS A:76 , GLU A:77 , LYS A:80 , HIS A:81 , HOH A:1213
BINDING SITE FOR RESIDUE SO4 A 1116
17
BC8
SOFTWARE
ASN A:9 , GLN A:19 , HIS A:32 , ALA A:62 , LEU A:73 , GLN A:129
BINDING SITE FOR RESIDUE JKM A 1117
18
BC9
SOFTWARE
ASN B:4 , ASN B:85 , TRP B:86 , NAG B:1102
BINDING SITE FOR RESIDUE NAG B 1101
19
CC1
SOFTWARE
ASN B:85 , TRP B:86 , TYR B:87 , PRO B:91 , NAG B:1101 , BMA B:1103
BINDING SITE FOR RESIDUE NAG B 1102
20
CC2
SOFTWARE
TRP B:86 , ASN B:88 , NAG B:1102 , MAN B:1104 , MAN B:1105
BINDING SITE FOR RESIDUE BMA B 1103
21
CC3
SOFTWARE
GLU A:37 , TYR B:87 , BMA B:1103
BINDING SITE FOR RESIDUE MAN B 1104
22
CC4
SOFTWARE
GLU B:90 , PRO B:91 , BMA B:1103 , BMA B:1106
BINDING SITE FOR RESIDUE MAN B 1105
23
CC5
SOFTWARE
HIS A:57 , MAN B:1105
BINDING SITE FOR RESIDUE BMA B 1106
24
CC6
SOFTWARE
GLY B:26 , ASN B:28 , ALA B:149 , ILE B:151 , GLU B:160 , NAG B:1108
BINDING SITE FOR RESIDUE NAG B 1107
25
CC7
SOFTWARE
GLY B:150 , GLN B:154 , NAG B:1107
BINDING SITE FOR RESIDUE NAG B 1108
26
CC8
SOFTWARE
GLU A:90 , LEU A:94 , HIS B:57 , ASN B:97 , HOH B:1209
BINDING SITE FOR RESIDUE NAG B 1109
27
CC9
SOFTWARE
LEU B:95 , THR B:99 , ASN B:102
BINDING SITE FOR RESIDUE NAG B 1110
28
DC1
SOFTWARE
ARG A:25 , ASN B:13 , ARG B:20
BINDING SITE FOR RESIDUE NAG B 1111
29
DC2
SOFTWARE
LYS A:142 , HIS B:32 , HIS B:76 , GLU B:77 , LYS B:80 , HIS B:81
BINDING SITE FOR RESIDUE SO4 B 1112
30
DC3
SOFTWARE
PHE A:159 , GLU A:160 , HOH A:1207 , THR B:49 , ASP B:50 , THR B:51 , HOH B:1205
BINDING SITE FOR RESIDUE SO4 B 1113
31
DC4
SOFTWARE
ASN B:9 , GLN B:19 , HIS B:32 , ALA B:62 , LEU B:73
BINDING SITE FOR RESIDUE JKM B 1114
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RNASE_T2_2 (A:73-84,B:73-84)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_T2_2
PS00531
Ribonuclease T2 family histidine active site 2.
POLG_BVDVC
341-352
2
A:73-84
B:73-84
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
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Protein
Nucleic
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Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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