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Biol. Unit 1
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Asym.Unit (104 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
NOVEL AND SELECTIVE PAN-PIM KINASE INHIBITOR
Authors
:
A. D. Ferguson
Date
:
21 Feb 12 (Deposition) - 11 Jul 12 (Release) - 25 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Pim1, Kinase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. A. Dakin, M. H. Block, H. Chen, E. Code, J. E. Dowling, X. Feng, A. D. Ferguson, I. Green, A. W. Hird, T. Howard, E. K. Keeton, M. L. Lamb, P. D. Lyne, H. Pollard, J. Read, A. J. Wu, T. Zhang, X. Zheng
Discovery Of Novel Benzylidene-1, 3-Thiazolidine-2, 4-Diones As Potent And Selective Inhibitors Of The Pim-1, Pim-2, And Pim-3 Protein Kinases.
Bioorg. Med. Chem. Lett. V. 22 4599 2012
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: (5Z)-5-{2-[(3R)-3-AMINOPIPERIDIN-1... (7LIa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7LI
1
Ligand/Ion
(5Z)-5-{2-[(3R)-3-AMINOPIPERIDIN-1-YL]-3-(PROPAN-2-YLOXY)BENZYLIDENE}-1,3-THIAZOLIDINE-2,4-DIONE
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:136 , ALA A:138 , LEU A:139 , GLN A:140 , LEU A:143 , HOH A:528
BINDING SITE FOR RESIDUE EDO A 401
02
AC2
SOFTWARE
ASP A:108 , TRP A:109
BINDING SITE FOR RESIDUE EDO A 402
03
AC3
SOFTWARE
GLU A:141 , ARG A:258 , SER A:260 , GLU A:282 , HOH A:593
BINDING SITE FOR RESIDUE EDO A 403
04
AC4
SOFTWARE
PHE A:100 , GLU A:153 , ARG A:156 , ASN A:160 , SER A:261 , GLN A:264
BINDING SITE FOR RESIDUE EDO A 404
05
AC5
SOFTWARE
PHE A:130 , ILE A:133 , ASP A:170 , ASP A:234 , GLY A:238 , ASP A:239
BINDING SITE FOR RESIDUE EDO A 405
06
AC6
SOFTWARE
GLU A:141 , GLU A:142 , ARG A:145 , HOH A:698
BINDING SITE FOR RESIDUE EDO A 406
07
AC7
SOFTWARE
TRP A:269 , ASP A:277 , HOH A:584
BINDING SITE FOR RESIDUE EDO A 407
08
AC8
SOFTWARE
VAL A:52 , ALA A:65 , LYS A:67 , ILE A:104 , VAL A:126 , ASP A:128 , GLU A:171 , LEU A:174 , ASP A:186 , HOH A:510 , HOH A:679 , HOH A:680 , HOH A:682
BINDING SITE FOR RESIDUE 7LI A 408
09
AC9
SOFTWARE
ARG A:156 , ARG A:258 , SER A:261 , PHE A:281 , HOH A:513 , HOH A:599
BINDING SITE FOR RESIDUE SO4 A 409
10
BC1
SOFTWARE
ARG A:179 , HOH A:613 , HOH A:701
BINDING SITE FOR RESIDUE SO4 A 410
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_041004 (Y53H, chain A, )
2: VAR_041005 (E124Q, chain A, )
3: VAR_041006 (E135K, chain A, )
4: VAR_041007 (E142D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041004
Y
144
H
PIM1_HUMAN
Unclassified
---
A
Y
53
H
2
UniProt
VAR_041005
E
215
Q
PIM1_HUMAN
Polymorphism
---
A
E
124
Q
3
UniProt
VAR_041006
E
226
K
PIM1_HUMAN
Polymorphism
---
A
E
135
K
4
UniProt
VAR_041007
E
233
D
PIM1_HUMAN
Polymorphism
---
A
E
142
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:44-67)
2: PROTEIN_KINASE_ST (A:163-175)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
PIM1_HUMAN
135-158
1
A:44-67
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
PIM1_HUMAN
254-266
1
A:163-175
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4dtka_ (A:)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Proto-oncogene serine/threonine-protein kinase Pim-1
(64)
Human (Homo sapiens) [TaxId: 9606]
(64)
1a
d4dtka_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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