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Getting 'Biological Unit' information from database.
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4DTG
Biol. Unit 1
Info
Asym.Unit (183 KB)
Biol.Unit 1 (175 KB)
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(1)
Title
:
HEMOSTATIC EFFECT OF A MONOCLONAL ANTIBODY MAB 2021 BLOCKING THE INTERACTION BETWEEN FXA AND TFPI IN A RABBIT HEMOPHILIA MODEL
Authors
:
L. A. Svensson, J. Breinholt, B. O. Krogh, I. Hilden
Date
:
21 Feb 12 (Deposition) - 13 Jun 12 (Release) - 25 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : H,K,L
Biol. Unit 1: H,K,L (1x)
Keywords
:
Antibody, Inhibitor, Blood Coagulation, Blood Clotting Inhibitor- Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Hilden, B. Lauritzen, B. B. Sorensen, J. T. Clausen, C. Jespersgaard, B. O. Krogh, A. N. Bowler, J. Breinholt, A. Gruhler, L. A. Svensson, H. H. Petersen, L. C. Petersen, K. W. Balling, L. Hansen M. B. Hermit, T. Egebjerg, B. Friederichsen, M. Ezban, S. E. Bjorn
Hemostatic Effect Of A Monoclonal Antibody Mab 2021 Blockin The Interaction Between Fxa And Tfpi In A Rabbit Hemophilia Model.
Blood V. 119 5871 2012
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
3c: TRIETHYLENE GLYCOL (PGEc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
10
Ligand/Ion
GLYCEROL
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
PGE
3
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE H:174 , PRO H:175 , SER H:185 , LEU H:186 , SER H:187 , GLN L:165 , SER L:167 , SER L:181 , SER L:182 , THR L:183 , HOH L:478
BINDING SITE FOR RESIDUE GOL L 301
02
AC2
SOFTWARE
LYS L:44 , GLN L:50 , LEU L:52 , PRO L:64 , PHE L:67 , GLU L:86 , ASP L:87
BINDING SITE FOR RESIDUE GOL L 302
03
AC3
SOFTWARE
LEU L:9 , TYR L:92 , GLY L:105 , GLY L:106
BINDING SITE FOR RESIDUE GOL L 303
04
AC4
SOFTWARE
THR L:7 , SER L:22 , LYS L:24 , SER L:68 , HOH L:508
BINDING SITE FOR RESIDUE GOL L 304
05
AC5
SOFTWARE
PRO L:15 , ARG L:113 , THR L:114
BINDING SITE FOR RESIDUE GOL L 305
06
AC6
SOFTWARE
LYS L:150 , HIS L:203 , GLN L:204
BINDING SITE FOR RESIDUE GOL L 306
07
AC7
SOFTWARE
ARG H:218 , LEU L:186 , SER L:187 , HOH L:526 , HOH L:570
BINDING SITE FOR RESIDUE GOL L 307
08
AC8
SOFTWARE
ASN H:163 , SER H:164 , THR H:203 , ASN H:205 , ASP H:216 , HOH H:432 , VAL L:155 , GLN L:160 , LEU L:186 , ASP L:190 , HIS L:194
BINDING SITE FOR RESIDUE MES H 301
09
AC9
SOFTWARE
GLN H:39 , THR H:40 , PRO H:41 , LYS H:43 , VAL H:93 , GOL H:305 , HOH H:460 , HOH H:485 , GLN L:43
BINDING SITE FOR RESIDUE PGE H 302
10
BC1
SOFTWARE
THR H:50 , HOH H:402 , HOH H:466 , HOH H:475 , HOH H:492 , GLU K:11 , ARG K:34 , PHE K:35 , HOH K:113 , GLN L:101
BINDING SITE FOR RESIDUE PGE H 303
11
BC2
SOFTWARE
ASN H:31 , TYR H:32 , HOH H:406 , GLU K:11 , ASN K:26 , THR K:29 , HOH K:115 , HOH K:118
BINDING SITE FOR RESIDUE PGE H 304
12
BC3
SOFTWARE
PRO H:41 , THR H:91 , THR H:116 , THR H:118 , GLU H:156 , PGE H:302 , HOH H:454
BINDING SITE FOR RESIDUE GOL H 305
13
BC4
SOFTWARE
TYR H:95 , GLN H:113 , GOL H:307 , SER L:48 , HOH L:580
BINDING SITE FOR RESIDUE GOL H 306
14
BC5
SOFTWARE
GLY H:114 , THR H:115 , THR H:116 , PRO H:157 , GOL H:306 , HOH H:446 , HOH H:502
BINDING SITE FOR RESIDUE GOL H 307
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BPTI_KUNITZ_2 ()
2: BPTI_KUNITZ_1 ()
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BPTI_KUNITZ_2
PS50279
Pancreatic trypsin inhibitor (Kunitz) family profile.
TFPI1_HUMAN
54-104
125-175
217-267
1
-
K:7-57
-
2
BPTI_KUNITZ_1
PS00280
Pancreatic trypsin inhibitor (Kunitz) family signature.
TFPI1_HUMAN
82-100
153-171
245-263
1
-
K:35-53
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4dtgl1 (L:1-111)
2a: SCOP_d4dtgl2 (L:112-219)
3a: SCOP_d4dtgk_ (K:)
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Classes
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Protein Domains
(
)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d4dtgl1
L:1-111
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d4dtgl2
L:112-219
Class
:
Small proteins
(3458)
Fold
:
BPTI-like
(161)
Superfamily
:
BPTI-like
(161)
Family
:
Small Kunitz-type inhibitors & BPTI-like toxins
(128)
Protein domain
:
automated matches
(20)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d4dtgk_
K:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Backbone
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Protein & NOT Site
Protein & NOT PROSITE
Chain H
Chain K
Chain L
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (183 KB)
Header - Asym.Unit
Biol.Unit 1 (175 KB)
Header - Biol.Unit 1
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