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4DRU
Biol. Unit 2
Info
Asym.Unit (385 KB)
Biol.Unit 1 (191 KB)
Biol.Unit 2 (193 KB)
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(1)
Title
:
HCV NS5B IN COMPLEX WITH MACROCYCLIC INDOLE INHIBITOR
Authors
:
M. D. Cummings, S. Vendeville
Date
:
17 Feb 12 (Deposition) - 18 Apr 12 (Release) - 15 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hcv Polymerase, Macrocycle Inhibitor, Thumb Domain, Transferase- Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Cummings, T. I. Lin, L. Hu, A. Tahri, D. Mcgowan, K. Amssoms, S. Last, B. Devogelaere, M. C. Rouan, L. Vijgen, J. M. Berke, P. Dehertogh, E. Fransen, E. Cleiren, L. Van Der Helm, G. Fanning, K. Van Emelen, O. Nyanguile, K. Simmen, P. Raboisson, S. Vendeville
Structure-Based Macrocyclization Yields Hepatitis C Virus Ns5B Inhibitors With Improved Binding Affinities And Pharmacokinetic Properties.
Angew. Chem. Int. Ed. Engl. V. 51 4637 2012
[
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]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: 13-CYCLOHEXYL-3-METHOXY-17,22-DIME... (0LNa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0LN
-1
Ligand/Ion
13-CYCLOHEXYL-3-METHOXY-17,22-DIMETHYL-7H-10,6-(METHANOIMINOTHIOIMINOBUTANOIMINOMETHANO)INDOLO[2,1-A][2]BENZAZEPINE-14,23-DIONE 16,16-DIOXIDE
2
GOL
5
Ligand/Ion
GLYCEROL
3
SO4
11
Ligand/Ion
SULFATE ION
[
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]
Sites
(19, 19)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
13: BC8 (SOFTWARE)
14: BC9 (SOFTWARE)
15: CC1 (SOFTWARE)
16: CC2 (SOFTWARE)
17: CC3 (SOFTWARE)
18: CC4 (SOFTWARE)
19: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
LYS A:79 , ASP A:244 , HOH A:918 , LEU B:68
BINDING SITE FOR RESIDUE SO4 A 603
02
AC5
SOFTWARE
LEU A:60 , LEU A:68 , VAL A:235 , LYS B:79 , ASP B:244
BINDING SITE FOR RESIDUE SO4 A 605
03
AC7
SOFTWARE
GLY A:8 , ALA A:9 , LEU A:10 , ILE A:11 , GLN A:49 , HOH A:850 , GLU B:341
BINDING SITE FOR RESIDUE GOL A 607
04
AC8
SOFTWARE
ARG B:505 , VAL B:530 , ARG B:531 , THR B:532
BINDING SITE FOR RESIDUE SO4 B 601
05
AC9
SOFTWARE
ARG A:114 , PRO B:22 , ILE B:23 , ASN B:24 , ALA B:400 , ARG B:401 , HOH B:1061
BINDING SITE FOR RESIDUE SO4 B 602
06
BC1
SOFTWARE
THR B:287 , SER B:288 , ASN B:291 , GLY B:317 , ASP B:318 , HOH B:844 , HOH B:1019
BINDING SITE FOR RESIDUE SO4 B 603
07
BC2
SOFTWARE
LYS B:209 , ARG B:380 , TYR B:382
BINDING SITE FOR RESIDUE SO4 B 604
08
BC3
SOFTWARE
ARG B:48 , LYS B:51 , ARG B:158 , CYS B:223 , HOH B:1033
BINDING SITE FOR RESIDUE SO4 B 605
09
BC4
SOFTWARE
ARG B:43 , HOH B:882
BINDING SITE FOR RESIDUE SO4 B 606
10
BC5
SOFTWARE
LEU B:474 , TYR B:477 , SO4 B:608
BINDING SITE FOR RESIDUE SO4 B 607
11
BC6
SOFTWARE
HIS B:475 , SER B:476 , SO4 B:607 , HOH B:933
BINDING SITE FOR RESIDUE SO4 B 608
12
BC7
SOFTWARE
TRP B:208 , LEU B:360 , TYR B:382 , HOH B:731
BINDING SITE FOR RESIDUE SO4 B 609
13
BC8
SOFTWARE
GLU B:440 , ARG B:517 , HOH B:774
BINDING SITE FOR RESIDUE SO4 B 610
14
BC9
SOFTWARE
CYS B:366 , SER B:368 , LEU B:384 , MET B:414 , TYR B:448
BINDING SITE FOR RESIDUE SO4 B 611
15
CC1
SOFTWARE
GLU B:361 , ASN B:369 , SER B:371 , SER B:478 , GLU B:481 , ARG B:484
BINDING SITE FOR RESIDUE GOL B 612
16
CC2
SOFTWARE
THR A:130 , GLU A:131 , ARG A:254 , GLU A:258 , LEU B:127 , PRO B:247 , GLN B:251
BINDING SITE FOR RESIDUE GOL B 613
17
CC3
SOFTWARE
LEU A:127 , PRO A:247 , GLU A:248 , THR B:130 , ARG B:254 , GLU B:258
BINDING SITE FOR RESIDUE GOL B 614
18
CC4
SOFTWARE
ASP A:244 , HOH A:763 , ARG B:234
BINDING SITE FOR RESIDUE GOL B 615
19
CC5
SOFTWARE
ARG B:386 , THR B:390 , ARG B:394
BINDING SITE FOR RESIDUE GOL B 616
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLG_HCVJ4_028 (C366R, chain B, )
2: VAR_POLG_HCVJ4_029 (I405V, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_HCVJ4_028
*
C
2785
R
POLG_HCVJ4
---
---
B
C
366
R
2
UniProt
VAR_POLG_HCVJ4_029
*
I
2824
V
POLG_HCVJ4
---
---
B
I
405
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RDRP_SSRNA_POS (B:214-332)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_HCVJ4
2633-2751
1
-
B:214-332
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4drua_ (A:)
1b: SCOP_d4drub_ (B:)
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Classes
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
Viral RNA polymerase
(148)
Hepatitis C virus [TaxId: 11103]
(72)
1a
d4drua_
A:
1b
d4drub_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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(currently selected atoms:
all
)
Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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Asym.Unit (385 KB)
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