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Asym. Unit
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Asym.Unit (87 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
O-CRYSTAL STRUCTURE OF THE PPIASE DOMAIN OF FKBP52, RAPAMYCIN AND THE FRB FRAGMENT OF MTOR
Authors
:
A. M. Maerz, A. Bracher, F. Hausch
Date
:
17 Feb 12 (Deposition) - 06 Feb 13 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophilin, Peptidyl- Prolyl Isomerase, Kinase, Signalling, Mammalian Target Of Rapamycin, Immunosuppression, Cancer, Isomerase-Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Marz, A. K. Fabian, C. Kozany, A. Bracher, F. Hausch
Large Fk506-Binding Proteins Shape The Pharmacology Of Rapamycin.
Mol. Cell. Biol. V. 33 1357 2013
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: RAPAMYCIN IMMUNOSUPPRESSANT DRUG (RAPa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
RAP
1
Ligand/Ion
RAPAMYCIN IMMUNOSUPPRESSANT DRUG
2
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:57 , PHE A:67 , ASP A:68 , PHE A:77 , GLY A:84 , GLU A:85 , VAL A:86 , ILE A:87 , TRP A:90 , TYR A:113 , LYS A:121 , PHE A:130 , HOH A:324 , HOH A:332 , HOH A:347 , HOH A:401 , LEU B:2031 , GLU B:2032 , SER B:2035 , PHE B:2039 , THR B:2098 , ASP B:2102 , TYR B:2105 , PHE B:2108
BINDING SITE FOR RESIDUE RAP A 201
2
AC2
SOFTWARE
ARG A:52 , PHE A:54 , SER A:78 , HOH A:339 , HOH A:390 , ARG B:2109 , LYS B:2113
BINDING SITE FOR RESIDUE SO4 A 202
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FKBP_PPIASE (A:50-138|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FKBP_PPIASE
PS50059
FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.
FKBP4_HUMAN
50-138
167-253
1
A:50-138
-
[
close PROSITE info
]
Exons
(6, 6)
Info
All Exons
Exon 1.1 (A:19-35)
Exon 1.2 (A:36-84)
Exon 1.3 (A:84-131)
Exon 1.4 (A:132-139)
Exon 2.43 (B:2019-2072 (gaps))
Exon 2.44 (B:2073-2114)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 2.42/2.43
7: Boundary 2.43/2.44
8: Boundary 2.44/2.45
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000001008
1
ENSE00000802791
chr12:
2904119-2904410
292
FKBP4_HUMAN
1-35
35
1
A:19-35
17
1.2
ENST00000001008
2
ENSE00000713106
chr12:
2906304-2906448
145
FKBP4_HUMAN
36-84
49
1
A:36-84
49
1.3
ENST00000001008
3
ENSE00000713108
chr12:
2906895-2907037
143
FKBP4_HUMAN
84-131
48
1
A:84-131
48
1.4
ENST00000001008
4
ENSE00000713109
chr12:
2907872-2907992
121
FKBP4_HUMAN
132-172
41
1
A:132-139
8
1.5
ENST00000001008
5
ENSE00000713111
chr12:
2908254-2908410
157
FKBP4_HUMAN
172-224
53
0
-
-
1.6
ENST00000001008
6
ENSE00000713114
chr12:
2909016-2909106
91
FKBP4_HUMAN
224-254
31
0
-
-
1.7
ENST00000001008
7
ENSE00000713116
chr12:
2909205-2909288
84
FKBP4_HUMAN
255-282
28
0
-
-
1.8
ENST00000001008
8
ENSE00000713118
chr12:
2909558-2909743
186
FKBP4_HUMAN
283-344
62
0
-
-
1.9
ENST00000001008
9
ENSE00000713120
chr12:
2910283-2910522
240
FKBP4_HUMAN
345-424
80
0
-
-
1.10
ENST00000001008
10
ENSE00000802792
chr12:
2912317-2913124
808
FKBP4_HUMAN
425-459
35
0
-
-
2.1
ENST00000361445
1
ENSE00001471842
chr1:
11322564-11322502
63
MTOR_HUMAN
-
0
0
-
-
2.2
ENST00000361445
2
ENSE00000818899
chr1:
11319480-11319305
176
MTOR_HUMAN
1-54
54
0
-
-
2.3
ENST00000361445
3
ENSE00000743816
chr1:
11318650-11318542
109
MTOR_HUMAN
55-91
37
0
-
-
2.4
ENST00000361445
4
ENSE00000743815
chr1:
11317222-11316990
233
MTOR_HUMAN
91-168
78
0
-
-
2.5
ENST00000361445
5
ENSE00000743814
chr1:
11316249-11316049
201
MTOR_HUMAN
169-235
67
0
-
-
2.6
ENST00000361445
6
ENSE00000743813
chr1:
11314030-11313896
135
MTOR_HUMAN
236-280
45
0
-
-
2.7
ENST00000361445
7
ENSE00000743812
chr1:
11308151-11307876
276
MTOR_HUMAN
281-372
92
0
-
-
2.8
ENST00000361445
8
ENSE00000743810
chr1:
11307790-11307682
109
MTOR_HUMAN
373-409
37
0
-
-
2.9
ENST00000361445
9
ENSE00000743807
chr1:
11303357-11303171
187
MTOR_HUMAN
409-471
63
0
-
-
2.10
ENST00000361445
10
ENSE00000743805
chr1:
11301738-11301610
129
MTOR_HUMAN
471-514
44
0
-
-
2.11
ENST00000361445
11
ENSE00000743803
chr1:
11300604-11300360
245
MTOR_HUMAN
514-596
83
0
-
-
2.12
ENST00000361445
12
ENSE00000743801
chr1:
11298674-11298459
216
MTOR_HUMAN
596-668
73
0
-
-
2.13
ENST00000361445
13
ENSE00000743799
chr1:
11298105-11297900
206
MTOR_HUMAN
668-736
69
0
-
-
2.14
ENST00000361445
14
ENSE00000743796
chr1:
11294322-11294200
123
MTOR_HUMAN
737-777
41
0
-
-
2.15
ENST00000361445
15
ENSE00000743794
chr1:
11293544-11293455
90
MTOR_HUMAN
778-807
30
0
-
-
2.16
ENST00000361445
16
ENSE00000743792
chr1:
11292585-11292493
93
MTOR_HUMAN
808-838
31
0
-
-
2.17
ENST00000361445
17
ENSE00000743790
chr1:
11291491-11291357
135
MTOR_HUMAN
839-883
45
0
-
-
2.18
ENST00000361445
18
ENSE00000743788
chr1:
11291111-11290982
130
MTOR_HUMAN
884-927
44
0
-
-
2.19
ENST00000361445
19
ENSE00000743785
chr1:
11288975-11288725
251
MTOR_HUMAN
927-1010
84
0
-
-
2.20
ENST00000361445
20
ENSE00000743783
chr1:
11276291-11276205
87
MTOR_HUMAN
1011-1039
29
0
-
-
2.21
ENST00000361445
21
ENSE00000743781
chr1:
11273623-11273456
168
MTOR_HUMAN
1040-1095
56
0
-
-
2.22
ENST00000361445
22
ENSE00000743779
chr1:
11272965-11272853
113
MTOR_HUMAN
1096-1133
38
0
-
-
2.23
ENST00000361445
23
ENSE00000743777
chr1:
11272531-11272369
163
MTOR_HUMAN
1133-1187
55
0
-
-
2.24
ENST00000361445
24
ENSE00000743775
chr1:
11270963-11270871
93
MTOR_HUMAN
1188-1218
31
0
-
-
2.25
ENST00000361445
25
ENSE00001435329
chr1:
11269515-11269369
147
MTOR_HUMAN
1219-1267
49
0
-
-
2.26
ENST00000361445
26
ENSE00000743771
chr1:
11264760-11264618
143
MTOR_HUMAN
1268-1315
48
0
-
-
2.27
ENST00000361445
27
ENSE00000743769
chr1:
11259760-11259598
163
MTOR_HUMAN
1315-1369
55
0
-
-
2.28
ENST00000361445
28
ENSE00000743767
chr1:
11259460-11259315
146
MTOR_HUMAN
1370-1418
49
0
-
-
2.29
ENST00000361445
29
ENSE00001167981
chr1:
11227574-11227499
76
MTOR_HUMAN
1418-1443
26
0
-
-
2.30
ENST00000361445
30
ENSE00001167973
chr1:
11217348-11217209
140
MTOR_HUMAN
1444-1490
47
0
-
-
2.31
ENST00000361445
31
ENSE00001167966
chr1:
11210283-11210183
101
MTOR_HUMAN
1490-1524
35
0
-
-
2.32
ENST00000361445
32
ENSE00001167960
chr1:
11206848-11206733
116
MTOR_HUMAN
1524-1562
39
0
-
-
2.33a
ENST00000361445
33a
ENSE00001167950
chr1:
11205102-11205025
78
MTOR_HUMAN
1563-1588
26
0
-
-
2.33c
ENST00000361445
33c
ENSE00001167940
chr1:
11204812-11204705
108
MTOR_HUMAN
1589-1624
36
0
-
-
2.34b
ENST00000361445
34b
ENSE00001167929
chr1:
11199715-11199590
126
MTOR_HUMAN
1625-1666
42
0
-
-
2.35a
ENST00000361445
35a
ENSE00001167919
chr1:
11199492-11199361
132
MTOR_HUMAN
1667-1710
44
0
-
-
2.36
ENST00000361445
36
ENSE00001167913
chr1:
11194523-11194408
116
MTOR_HUMAN
1711-1749
39
0
-
-
2.37a
ENST00000361445
37a
ENSE00001167905
chr1:
11193254-11193137
118
MTOR_HUMAN
1749-1788
40
0
-
-
2.38b
ENST00000361445
38b
ENSE00001167893
chr1:
11190834-11190586
249
MTOR_HUMAN
1789-1871
83
0
-
-
2.39
ENST00000361445
39
ENSE00001041990
chr1:
11189895-11189795
101
MTOR_HUMAN
1872-1905
34
0
-
-
2.40
ENST00000361445
40
ENSE00001167869
chr1:
11189008-11188912
97
MTOR_HUMAN
1905-1937
33
0
-
-
2.41
ENST00000361445
41
ENSE00001167858
chr1:
11188609-11188511
99
MTOR_HUMAN
1938-1970
33
0
-
-
2.42
ENST00000361445
42
ENSE00001167852
chr1:
11188183-11188061
123
MTOR_HUMAN
1971-2011
41
0
-
-
2.43
ENST00000361445
43
ENSE00001167844
chr1:
11187863-11187681
183
MTOR_HUMAN
2012-2072
61
1
B:2019-2072 (gaps)
61
2.44
ENST00000361445
44
ENSE00001167837
chr1:
11187201-11187067
135
MTOR_HUMAN
2073-2117
45
1
B:2073-2114
42
2.45
ENST00000361445
45
ENSE00001167829
chr1:
11186853-11186679
175
MTOR_HUMAN
2118-2176
59
0
-
-
2.46
ENST00000361445
46
ENSE00001167821
chr1:
11184690-11184555
136
MTOR_HUMAN
2176-2221
46
0
-
-
2.47
ENST00000361445
47
ENSE00001167814
chr1:
11182183-11182036
148
MTOR_HUMAN
2221-2270
50
0
-
-
2.48
ENST00000361445
48
ENSE00001167809
chr1:
11181425-11181303
123
MTOR_HUMAN
2271-2311
41
0
-
-
2.49
ENST00000361445
49
ENSE00001167801
chr1:
11177143-11177061
83
MTOR_HUMAN
2312-2339
28
0
-
-
2.50c
ENST00000361445
50c
ENSE00001167794
chr1:
11175525-11175453
73
MTOR_HUMAN
2339-2363
25
0
-
-
2.51
ENST00000361445
51
ENSE00001167789
chr1:
11174944-11174870
75
MTOR_HUMAN
2364-2388
25
0
-
-
2.52b
ENST00000361445
52b
ENSE00001065832
chr1:
11174510-11174375
136
MTOR_HUMAN
2389-2434
46
0
-
-
2.53
ENST00000361445
53
ENSE00001167772
chr1:
11172974-11172909
66
MTOR_HUMAN
2434-2456
23
0
-
-
2.55
ENST00000361445
55
ENSE00001167761
chr1:
11169786-11169706
81
MTOR_HUMAN
2456-2483
28
0
-
-
2.56b
ENST00000361445
56b
ENSE00001167749
chr1:
11169427-11169347
81
MTOR_HUMAN
2483-2510
28
0
-
-
2.57
ENST00000361445
57
ENSE00000818867
chr1:
11168343-11168238
106
MTOR_HUMAN
2510-2545
36
0
-
-
2.58c
ENST00000361445
58c
ENSE00001345243
chr1:
11167557-11166592
966
MTOR_HUMAN
2545-2549
5
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4drjb_ (B:)
2a: SCOP_d4drja_ (A:)
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
(11)
Family
:
FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
(11)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d4drjb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
FKBP-like
(198)
Family
:
FKBP immunophilin/proline isomerase
(153)
Protein domain
:
FKBP52, N-terminal domains
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d4drja_
A:
[
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