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4DQL
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (143 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FAD BINDING DOMAIN OF CYTOCHROME P450 BM3 IN COMPLEX WITH NADP+
Authors
:
M. G. Joyce, D. Leys
Date
:
16 Feb 12 (Deposition) - 07 Mar 12 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Rossmann Fold, Redox, Fad And Nadp+ Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. G. Joyce, I. S. Ekanem, O. Roitel, A. J. Dunford, R. Neeli, H. M. Girvan, G. J. Baker, R. A. Curtis, A. W. Munro, D. Leys
The Crystal Structure Of The Fad/Nadph-Binding Domain Of Flavocytochrome P450 Bm3.
Febs J. V. 279 1694 2012
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
4c: TETRAETHYLENE GLYCOL (PG4c)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:700 , GLN A:757 , ARG A:798 , ARG A:828 , TYR A:829 , TYR A:830 , SER A:831 , THR A:846 , VAL A:847 , SER A:848 , GLU A:853 , ALA A:854 , TRP A:855 , TYR A:861 , GLY A:863 , ILE A:864 , ALA A:865 , SER A:866 , THR A:906 , TRP A:1047 , GLY A:1049 , HOH A:1206 , HOH A:1210 , HOH A:1213 , HOH A:1237 , HOH A:1242 , HOH A:1277 , HOH A:1320 , HOH A:1443 , HOH A:1474
BINDING SITE FOR RESIDUE FAD A 1101
02
AC2
SOFTWARE
ARG A:680 , SER A:848 , VAL A:850 , GLY A:905 , THR A:906 , CYS A:937 , ARG A:938 , SER A:966 , ARG A:967 , TYR A:975 , GLN A:977 , MET A:1006 , HOH A:1212 , HOH A:1220 , HOH A:1234 , HOH A:1244 , HOH A:1280 , HOH A:1375 , HOH A:1412 , HOH A:1416 , HOH A:1418 , HOH A:1524 , HOH A:1526 , HOH A:1555
BINDING SITE FOR RESIDUE NAP A 1102
03
AC3
SOFTWARE
PRO A:892 , LYS A:893 , HIS A:996 , HOH A:1271 , HOH A:1289 , HOH A:1398 , HIS B:660
BINDING SITE FOR RESIDUE SO4 A 1103
04
AC4
SOFTWARE
ASP A:992 , TRP A:1032 , GLN A:1035 , LEU A:1036 , LYS A:1039 , ARG A:1041 , HOH A:1219 , HOH B:1458
BINDING SITE FOR RESIDUE 1PE A 1104
05
AC5
SOFTWARE
LYS A:671 , GLU A:672 , LEU A:673 , TYR A:946 , GLU A:949 , HOH A:1558
BINDING SITE FOR RESIDUE PG4 A 1105
06
AC6
SOFTWARE
GLN A:1035 , GLU A:1038 , HIS B:700 , GLN B:757 , ARG B:798 , ARG B:828 , TYR B:829 , TYR B:830 , SER B:831 , THR B:846 , VAL B:847 , SER B:848 , VAL B:850 , GLU B:853 , ALA B:854 , TRP B:855 , TYR B:861 , GLY B:863 , ILE B:864 , ALA B:865 , SER B:866 , TRP B:1047 , GLY B:1049 , HOH B:1203 , HOH B:1219 , HOH B:1223 , HOH B:1236 , HOH B:1279 , HOH B:1352 , HOH B:1374 , HOH B:1410 , HOH B:1417 , HOH B:1466
BINDING SITE FOR RESIDUE FAD B 1101
07
AC7
SOFTWARE
ARG B:680 , GLY B:905 , THR B:906 , CYS B:937 , ARG B:938 , SER B:966 , ARG B:967 , LYS B:973 , TYR B:975 , GLN B:977 , GLN B:1005 , MET B:1006 , HOH B:1237 , HOH B:1238 , HOH B:1246 , HOH B:1257 , HOH B:1300 , HOH B:1451
BINDING SITE FOR RESIDUE NAP B 1102
08
AC8
SOFTWARE
ARG B:762 , ARG B:766
BINDING SITE FOR RESIDUE SO4 B 1103
09
AC9
SOFTWARE
LYS B:671 , LEU B:673 , ARG B:912 , TYR B:946 , GLU B:949 , HOH B:1440
BINDING SITE FOR RESIDUE PG4 B 1104
10
BC1
SOFTWARE
TYR B:858 , GLY B:859 , GLU B:860 , HOH B:1431 , HOH B:1528
BINDING SITE FOR RESIDUE PG4 B 1105
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FAD_FR (B:660-892)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
CPXB_BACMB
660-892
1
B:660-892
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4dqla1 (A:661-887)
1b: SCOP_d4dqlb1 (B:658-887)
2a: SCOP_d4dqla2 (A:888-1049)
2b: SCOP_d4dqlb2 (B:888-1049)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Bacillus megaterium [TaxId: 1404]
(2)
1a
d4dqla1
A:661-887
1b
d4dqlb1
B:658-887
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Bacillus megaterium [TaxId: 1404]
(2)
2a
d4dqla2
A:888-1049
2b
d4dqlb2
B:888-1049
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (150 KB)
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Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
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Biol.Unit 3 (143 KB)
Header - Biol.Unit 3
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