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4DQL
Biol. Unit 1
Info
Asym.Unit (150 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (143 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FAD BINDING DOMAIN OF CYTOCHROME P450 BM3 IN COMPLEX WITH NADP+
Authors
:
M. G. Joyce, D. Leys
Date
:
16 Feb 12 (Deposition) - 07 Mar 12 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Rossmann Fold, Redox, Fad And Nadp+ Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
M. G. Joyce, I. S. Ekanem, O. Roitel, A. J. Dunford, R. Neeli, H. M. Girvan, G. J. Baker, R. A. Curtis, A. W. Munro, D. Leys
The Crystal Structure Of The Fad/Nadph-Binding Domain Of Flavocytochrome P450 Bm3.
Febs J. V. 279 1694 2012
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
4c: TETRAETHYLENE GLYCOL (PG4c)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:700 , GLN A:757 , ARG A:798 , ARG A:828 , TYR A:829 , TYR A:830 , SER A:831 , THR A:846 , VAL A:847 , SER A:848 , GLU A:853 , ALA A:854 , TRP A:855 , TYR A:861 , GLY A:863 , ILE A:864 , ALA A:865 , SER A:866 , THR A:906 , TRP A:1047 , GLY A:1049 , HOH A:1206 , HOH A:1210 , HOH A:1213 , HOH A:1237 , HOH A:1242 , HOH A:1277 , HOH A:1320 , HOH A:1443 , HOH A:1474
BINDING SITE FOR RESIDUE FAD A 1101
2
AC2
SOFTWARE
ARG A:680 , SER A:848 , VAL A:850 , GLY A:905 , THR A:906 , CYS A:937 , ARG A:938 , SER A:966 , ARG A:967 , TYR A:975 , GLN A:977 , MET A:1006 , HOH A:1212 , HOH A:1220 , HOH A:1234 , HOH A:1244 , HOH A:1280 , HOH A:1375 , HOH A:1412 , HOH A:1416 , HOH A:1418 , HOH A:1524 , HOH A:1526 , HOH A:1555
BINDING SITE FOR RESIDUE NAP A 1102
3
AC3
SOFTWARE
PRO A:892 , LYS A:893 , HIS A:996 , HOH A:1271 , HOH A:1289 , HOH A:1398 , HIS B:660
BINDING SITE FOR RESIDUE SO4 A 1103
4
AC4
SOFTWARE
ASP A:992 , TRP A:1032 , GLN A:1035 , LEU A:1036 , LYS A:1039 , ARG A:1041 , HOH A:1219 , HOH B:1458
BINDING SITE FOR RESIDUE 1PE A 1104
5
AC5
SOFTWARE
LYS A:671 , GLU A:672 , LEU A:673 , TYR A:946 , GLU A:949 , HOH A:1558
BINDING SITE FOR RESIDUE PG4 A 1105
6
AC6
SOFTWARE
GLN A:1035 , GLU A:1038 , HIS B:700 , GLN B:757 , ARG B:798 , ARG B:828 , TYR B:829 , TYR B:830 , SER B:831 , THR B:846 , VAL B:847 , SER B:848 , VAL B:850 , GLU B:853 , ALA B:854 , TRP B:855 , TYR B:861 , GLY B:863 , ILE B:864 , ALA B:865 , SER B:866 , TRP B:1047 , GLY B:1049 , HOH B:1203 , HOH B:1219 , HOH B:1223 , HOH B:1236 , HOH B:1279 , HOH B:1352 , HOH B:1374 , HOH B:1410 , HOH B:1417 , HOH B:1466
BINDING SITE FOR RESIDUE FAD B 1101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4dqla1 (A:661-887)
1b: SCOP_d4dqlb1 (B:658-887)
2a: SCOP_d4dqla2 (A:888-1049)
2b: SCOP_d4dqlb2 (B:888-1049)
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Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Bacillus megaterium [TaxId: 1404]
(2)
1a
d4dqla1
A:661-887
1b
d4dqlb1
B:658-887
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Bacillus megaterium [TaxId: 1404]
(2)
2a
d4dqla2
A:888-1049
2b
d4dqlb2
B:888-1049
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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