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4DOS
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (94 KB)
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(1)
Title
:
HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, BOUND TO DLPC AND A FRAGMENT OF TIF-2
Authors
:
P. M. Musille, E. A. Ortlund
Date
:
10 Feb 12 (Deposition) - 18 Apr 12 (Release) - 16 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (1x)
Biol. Unit 3: A,B,C (2x)
Keywords
:
Nuclear Receptor, Ligand Binding Domain, Phospholipids, Nr5A, Diabetes, Phosphatidylcholine, Dlpc, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Musille, M. C. Pathak, J. L. Lauer, W. H. Hudson, P. R. Griffin, E. A. Ortlund
Antidiabetic Phospholipid-Nuclear Receptor Complex Reveals The Mechanism For Phospholipid-Driven Gene Regulation.
Nat. Struct. Mol. Biol. V. 19 532 2012
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
2a: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
3
Ligand/Ion
PENTAETHYLENE GLYCOL
2
PLC
1
Ligand/Ion
DIUNDECYL PHOSPHATIDYL CHOLINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:409 , GLN A:410 , HOH A:786
BINDING SITE FOR RESIDUE 1PE A 601
2
AC2
SOFTWARE
GLU A:514 , GLU A:515 , TYR A:518
BINDING SITE FOR RESIDUE 1PE A 602
3
AC3
SOFTWARE
PHE A:342 , MET A:345 , TRP A:382 , SER A:383 , HIS A:390 , ILE A:416 , GLN A:419 , ALA A:420 , GLY A:421 , LEU A:424 , LEU A:459 , ASP A:460 , VAL A:461 , ALA A:513 , TYR A:516 , LYS A:520 , HOH A:816
BINDING SITE FOR RESIDUE PLC A 603
4
AC4
SOFTWARE
ALA A:299 , ILE A:301 , ARG A:446 , TYR A:484
BINDING SITE FOR RESIDUE 1PE A 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.7 (A:297-370)
Exon 1.9 (A:371-410)
Exon 1.10 (A:411-460)
Exon 1.11b (A:460-538)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11b
5: Boundary 1.11b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367362
1a
ENSE00001869866
chr1:
199996730-199997039
310
NR5A2_HUMAN
1-22
22
0
-
-
1.4b
ENST00000367362
4b
ENSE00001624402
chr1:
200008786-200008923
138
NR5A2_HUMAN
22-68
47
0
-
-
1.5a
ENST00000367362
5a
ENSE00001705336
chr1:
200012902-200013020
119
NR5A2_HUMAN
68-107
40
0
-
-
1.6
ENST00000367362
6
ENSE00001742097
chr1:
200014571-200014712
142
NR5A2_HUMAN
108-155
48
0
-
-
1.7
ENST00000367362
7
ENSE00001616774
chr1:
200017300-200017946
647
NR5A2_HUMAN
155-370
216
1
A:297-370
74
1.9
ENST00000367362
9
ENSE00001680332
chr1:
200080330-200080449
120
NR5A2_HUMAN
371-410
40
1
A:371-410
40
1.10
ENST00000367362
10
ENSE00001632410
chr1:
200089936-200090083
148
NR5A2_HUMAN
411-460
50
1
A:411-460
50
1.11b
ENST00000367362
11b
ENSE00001420464
chr1:
200143091-200146552
3462
NR5A2_HUMAN
460-541
82
1
A:460-538
79
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Show PDB file:
Asym.Unit (54 KB)
Header - Asym.Unit
Biol.Unit 1 (48 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
Biol.Unit 3 (94 KB)
Header - Biol.Unit 3
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