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4DOM
Asym. Unit
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Asym.Unit (31 KB)
Biol.Unit 1 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TIR-DOMAIN OF HUMAN MYELOID DIFFERENTIATION PRIMARY RESPONSE PROTEIN (MYD88)
Authors
:
J. S. Jiang, G. A. Snyder, T. Xiao
Date
:
09 Feb 12 (Deposition) - 10 Apr 13 (Release) - 08 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Myd88_human, Tir-Domain, Toll-Like Receptor, Adopter Domain, Innate Immune Signaling, Tirap/Mal, Signaling Protein, Lysine Methylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. A. Snyder, C. Cirl, J. Jiang, K. Chen, A. Waldhuber, P. Smith, F. Rommler, N. Snyder, T. Fresquez, S. Durr, N. Tjandra, T. Miethke, T. S. Xiao
Molecular Mechanisms For The Subversion Of Myd88 Signaling By Tcpc From Virulent Uropathogenic Escherichia Coli.
Proc. Natl. Acad. Sci. Usa V. 110 6985 2013
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
2a: N-DIMETHYL-LYSINE (MLYa)
2b: N-DIMETHYL-LYSINE (MLYb)
2c: N-DIMETHYL-LYSINE (MLYc)
2d: N-DIMETHYL-LYSINE (MLYd)
2e: N-DIMETHYL-LYSINE (MLYe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
2
MLY
5
Mod. Amino Acid
N-DIMETHYL-LYSINE
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_072896 (M178I, chain A, )
02: VAR_047954 (R196C, chain A, )
03: VAR_073255 (V204F, chain A, )
04: VAR_073256 (W205R, chain A, )
05: VAR_073257 (S206C, chain A, )
06: VAR_073258 (I207T, chain A, )
07: VAR_073259 (S209R, chain A, )
08: VAR_073260 (M219T, chain A, )
09: VAR_073261 (S230N, chain A, )
10: VAR_073262 (L252P, chain A, )
11: VAR_073263 (T281P, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072896
M
178
I
MYD88_HUMAN
Unclassified
---
A
M
178
I
02
UniProt
VAR_047954
R
196
C
MYD88_HUMAN
Disease (MYD88D)
---
A
R
196
C
03
UniProt
VAR_073255
V
204
F
MYD88_HUMAN
Unclassified
---
A
V
204
F
04
UniProt
VAR_073256
W
205
R
MYD88_HUMAN
Unclassified
---
A
W
205
R
05
UniProt
VAR_073257
S
206
C
MYD88_HUMAN
Unclassified
---
A
S
206
C
06
UniProt
VAR_073258
I
207
T
MYD88_HUMAN
Unclassified
---
A
I
207
T
07
UniProt
VAR_073259
S
209
R
MYD88_HUMAN
Unclassified
---
A
S
209
R
08
UniProt
VAR_073260
M
219
T
MYD88_HUMAN
Unclassified
---
A
M
219
T
09
UniProt
VAR_073261
S
230
N
MYD88_HUMAN
Unclassified
---
A
S
230
N
10
UniProt
VAR_073262
L
252
P
MYD88_HUMAN
Unclassified
---
A
L
252
P
11
UniProt
VAR_073263
T
281
P
MYD88_HUMAN
Unclassified
---
A
T
281
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TIR (A:159-296)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TIR
PS50104
TIR domain profile.
MYD88_HUMAN
159-296
1
A:159-296
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
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1a: SCOP_d4doma_ (A:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Toll/Interleukin receptor TIR domain
(9)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d4doma_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (31 KB)
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Header - Biol.Unit 1
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