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4DN8
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (158 KB)
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(1)
Title
:
STRUCTURE OF PORCINE SURFACTANT PROTEIN D NECK AND CARBOHYDRATE RECOGNITION DOMAIN COMPLEXED WITH MANNOSE
Authors
:
M. Van Eijk, M. J. Rynkiewicz, M. R. White, K. L. Hartshorn, X. Zou, K. Sc D. Luo, E. C. Crouch, T. M. Cafarella, J. F. Head, H. P. Haagsman, B. A. Se
Date
:
08 Feb 12 (Deposition) - 20 Jun 12 (Release) - 22 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Collectin, Lectin, Carbohydrate/Sugar Binding, Lung Surfactant, Sugar Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Van Eijk, M. J. Rynkiewicz, M. R. White, K. L. Hartshorn, X. Zou, K. Schulten, D. Luo, E. C. Crouch, T. R. Cafarella, J. F. Head, H. P. Haagsman, B. A. Seaton
A Unique Sugar-Binding Site Mediates The Distinct Anti-Influenza Activity Of Pig Surfactant Protein D.
J. Biol. Chem. V. 287 26666 2012
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
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No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:297 , GLU A:301 , ASN A:324 , GLU A:329 , ASN A:330
BINDING SITE FOR RESIDUE CA A 401
2
AC2
SOFTWARE
GLU A:321 , ASN A:323 , GLU A:329 , ASN A:341 , ASP A:342 , BMA A:403
BINDING SITE FOR RESIDUE CA A 402
3
AC3
SOFTWARE
GLU A:321 , ASN A:323 , ASN A:325 , GLU A:329 , ASN A:341 , LYS A:343 , CA A:402
BINDING SITE FOR RESIDUE BMA A 403
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
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1: C_TYPE_LECTIN_2 (A:252-354)
2: C_TYPE_LECTIN_1 (A:331-353)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
SFTPD_PIG
272-377
1
A:252-354
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
SFTPD_PIG
354-376
1
A:331-353
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d4dn8a1 (A:235-355)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Surfactant protein, lectin domain
(16)
Pig (Sus scrofa) [TaxId: 9823]
(1)
1a
d4dn8a1
A:235-355
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (59 KB)
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