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4DL1
Asym. Unit
Info
Asym.Unit (1.6 MB)
Biol.Unit 1 (427 KB)
Biol.Unit 10 (218 KB)
Biol.Unit 11 (219 KB)
Biol.Unit 12 (222 KB)
Biol.Unit 2 (423 KB)
Biol.Unit 3 (420 KB)
Biol.Unit 4 (426 KB)
Biol.Unit 5 (221 KB)
Biol.Unit 6 (220 KB)
Biol.Unit 7 (219 KB)
Biol.Unit 8 (218 KB)
Biol.Unit 9 (217 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE WITH COVALENT THIOXANTHINE ANALOG
Authors
:
F. Vajdos, A. Varghese
Date
:
05 Feb 12 (Deposition) - 21 Mar 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Biol. Unit 5: A,C (1x)
Biol. Unit 6: B,D (1x)
Biol. Unit 7: E,G (1x)
Biol. Unit 8: F,H (1x)
Biol. Unit 9: I,K (1x)
Biol. Unit 10: J,L (1x)
Biol. Unit 11: M,O (1x)
Biol. Unit 12: N,P (1x)
Keywords
:
Oxidoreductase, Heme-Dependent Peroxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. F. Geoghegan, A. H. Varghese, X. Feng, A. J. Bessire, J. J. Conboy, R. B. Ruggeri, K. Ahn, S. N. Spath, S. V. Filippov, S. J. Conrad, P. A. Carpino, C. R. Guimaraes, F. F. Vajdos
Deconstruction Of Activity-Dependent Covalent Modification Of Heme In Human Neutrophil Myeloperoxidase By Multistage Mass Spectrometry (Ms(4)).
Biochemistry V. 51 2065 2012
[
close entry info
]
Hetero Components
(9, 108)
Info
All Hetero Components
1a: 3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1... (0KYa)
1b: 3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1... (0KYb)
1c: 3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1... (0KYc)
1d: 3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1... (0KYd)
1e: 3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1... (0KYe)
1f: 3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1... (0KYf)
1g: 3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1... (0KYg)
1h: 3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1... (0KYh)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
2g: BETA-D-MANNOSE (BMAg)
2h: BETA-D-MANNOSE (BMAh)
2i: BETA-D-MANNOSE (BMAi)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
4e: CHLORIDE ION (CLe)
4f: CHLORIDE ION (CLf)
4g: CHLORIDE ION (CLg)
4h: CHLORIDE ION (CLh)
5a: S-HYDROXYCYSTEINE (CSOa)
5b: S-HYDROXYCYSTEINE (CSOb)
5c: S-HYDROXYCYSTEINE (CSOc)
5d: S-HYDROXYCYSTEINE (CSOd)
5e: S-HYDROXYCYSTEINE (CSOe)
5f: S-HYDROXYCYSTEINE (CSOf)
5g: S-HYDROXYCYSTEINE (CSOg)
5h: S-HYDROXYCYSTEINE (CSOh)
6a: ALPHA-L-FUCOSE (FUCa)
6b: ALPHA-L-FUCOSE (FUCb)
6c: ALPHA-L-FUCOSE (FUCc)
6d: ALPHA-L-FUCOSE (FUCd)
6e: ALPHA-L-FUCOSE (FUCe)
6f: ALPHA-L-FUCOSE (FUCf)
6g: ALPHA-L-FUCOSE (FUCg)
6h: ALPHA-L-FUCOSE (FUCh)
7a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
7b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
7c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
7d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
7e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
7f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
7g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
7h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
8a: ALPHA-D-MANNOSE (MANa)
8b: ALPHA-D-MANNOSE (MANb)
8c: ALPHA-D-MANNOSE (MANc)
8d: ALPHA-D-MANNOSE (MANd)
8e: ALPHA-D-MANNOSE (MANe)
8f: ALPHA-D-MANNOSE (MANf)
8g: ALPHA-D-MANNOSE (MANg)
8h: ALPHA-D-MANNOSE (MANh)
8i: ALPHA-D-MANNOSE (MANi)
8j: ALPHA-D-MANNOSE (MANj)
8k: ALPHA-D-MANNOSE (MANk)
8l: ALPHA-D-MANNOSE (MANl)
8m: ALPHA-D-MANNOSE (MANm)
8n: ALPHA-D-MANNOSE (MANn)
8o: ALPHA-D-MANNOSE (MANo)
8p: ALPHA-D-MANNOSE (MANp)
8q: ALPHA-D-MANNOSE (MANq)
8r: ALPHA-D-MANNOSE (MANr)
9a: N-ACETYL-D-GLUCOSAMINE (NAGa)
9aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
9ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
9ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
9ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
9ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
9af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
9ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
9b: N-ACETYL-D-GLUCOSAMINE (NAGb)
9c: N-ACETYL-D-GLUCOSAMINE (NAGc)
9d: N-ACETYL-D-GLUCOSAMINE (NAGd)
9e: N-ACETYL-D-GLUCOSAMINE (NAGe)
9f: N-ACETYL-D-GLUCOSAMINE (NAGf)
9g: N-ACETYL-D-GLUCOSAMINE (NAGg)
9h: N-ACETYL-D-GLUCOSAMINE (NAGh)
9i: N-ACETYL-D-GLUCOSAMINE (NAGi)
9j: N-ACETYL-D-GLUCOSAMINE (NAGj)
9k: N-ACETYL-D-GLUCOSAMINE (NAGk)
9l: N-ACETYL-D-GLUCOSAMINE (NAGl)
9m: N-ACETYL-D-GLUCOSAMINE (NAGm)
9n: N-ACETYL-D-GLUCOSAMINE (NAGn)
9o: N-ACETYL-D-GLUCOSAMINE (NAGo)
9p: N-ACETYL-D-GLUCOSAMINE (NAGp)
9q: N-ACETYL-D-GLUCOSAMINE (NAGq)
9r: N-ACETYL-D-GLUCOSAMINE (NAGr)
9s: N-ACETYL-D-GLUCOSAMINE (NAGs)
9t: N-ACETYL-D-GLUCOSAMINE (NAGt)
9u: N-ACETYL-D-GLUCOSAMINE (NAGu)
9v: N-ACETYL-D-GLUCOSAMINE (NAGv)
9w: N-ACETYL-D-GLUCOSAMINE (NAGw)
9x: N-ACETYL-D-GLUCOSAMINE (NAGx)
9y: N-ACETYL-D-GLUCOSAMINE (NAGy)
9z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0KY
8
Ligand/Ion
3-[(2R)-2-ETHOXYPROPYL]-2-THIOXO-1,2,3,9-TETRAHYDRO-6H-PURIN-6-ONE
2
BMA
9
Ligand/Ion
BETA-D-MANNOSE
3
CA
8
Ligand/Ion
CALCIUM ION
4
CL
8
Ligand/Ion
CHLORIDE ION
5
CSO
8
Mod. Amino Acid
S-HYDROXYCYSTEINE
6
FUC
8
Ligand/Ion
ALPHA-L-FUCOSE
7
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
8
MAN
18
Ligand/Ion
ALPHA-D-MANNOSE
9
NAG
33
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(100, 100)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: BC1 (SOFTWARE)
011: BC2 (SOFTWARE)
012: BC3 (SOFTWARE)
013: BC4 (SOFTWARE)
014: BC5 (SOFTWARE)
015: BC6 (SOFTWARE)
016: BC7 (SOFTWARE)
017: BC8 (SOFTWARE)
018: BC9 (SOFTWARE)
019: CC1 (SOFTWARE)
020: CC2 (SOFTWARE)
021: CC3 (SOFTWARE)
022: CC4 (SOFTWARE)
023: CC5 (SOFTWARE)
024: CC6 (SOFTWARE)
025: CC7 (SOFTWARE)
026: CC8 (SOFTWARE)
027: CC9 (SOFTWARE)
028: DC1 (SOFTWARE)
029: DC2 (SOFTWARE)
030: DC3 (SOFTWARE)
031: DC4 (SOFTWARE)
032: DC5 (SOFTWARE)
033: DC6 (SOFTWARE)
034: DC7 (SOFTWARE)
035: DC8 (SOFTWARE)
036: DC9 (SOFTWARE)
037: EC1 (SOFTWARE)
038: EC2 (SOFTWARE)
039: EC3 (SOFTWARE)
040: EC4 (SOFTWARE)
041: EC5 (SOFTWARE)
042: EC6 (SOFTWARE)
043: EC7 (SOFTWARE)
044: EC8 (SOFTWARE)
045: EC9 (SOFTWARE)
046: FC1 (SOFTWARE)
047: FC2 (SOFTWARE)
048: FC3 (SOFTWARE)
049: FC4 (SOFTWARE)
050: FC5 (SOFTWARE)
051: FC6 (SOFTWARE)
052: FC7 (SOFTWARE)
053: FC8 (SOFTWARE)
054: FC9 (SOFTWARE)
055: GC1 (SOFTWARE)
056: GC2 (SOFTWARE)
057: GC3 (SOFTWARE)
058: GC4 (SOFTWARE)
059: GC5 (SOFTWARE)
060: GC6 (SOFTWARE)
061: GC7 (SOFTWARE)
062: GC8 (SOFTWARE)
063: GC9 (SOFTWARE)
064: HC1 (SOFTWARE)
065: HC2 (SOFTWARE)
066: HC3 (SOFTWARE)
067: HC4 (SOFTWARE)
068: HC5 (SOFTWARE)
069: HC6 (SOFTWARE)
070: HC7 (SOFTWARE)
071: HC8 (SOFTWARE)
072: HC9 (SOFTWARE)
073: IC1 (SOFTWARE)
074: IC2 (SOFTWARE)
075: IC3 (SOFTWARE)
076: IC4 (SOFTWARE)
077: IC5 (SOFTWARE)
078: IC6 (SOFTWARE)
079: IC7 (SOFTWARE)
080: IC8 (SOFTWARE)
081: IC9 (SOFTWARE)
082: JC1 (SOFTWARE)
083: JC2 (SOFTWARE)
084: JC3 (SOFTWARE)
085: JC4 (SOFTWARE)
086: JC5 (SOFTWARE)
087: JC6 (SOFTWARE)
088: JC7 (SOFTWARE)
089: JC8 (SOFTWARE)
090: JC9 (SOFTWARE)
091: KC1 (SOFTWARE)
092: KC2 (SOFTWARE)
093: KC3 (SOFTWARE)
094: KC4 (SOFTWARE)
095: KC5 (SOFTWARE)
096: KC6 (SOFTWARE)
097: KC7 (SOFTWARE)
098: KC8 (SOFTWARE)
099: KC9 (SOFTWARE)
100: LC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
ARG A:31 , TRP A:32 , HOH A:1704 , VAL C:327
BINDING SITE FOR RESIDUE CL A 1601
002
AC2
SOFTWARE
GLU A:102 , PRO A:103 , HOH A:1706 , HOH A:1741 , PHE C:147 , ARG C:239 , HEM C:601 , HOH C:702 , HOH C:835
BINDING SITE FOR RESIDUE 0KY A 1602
003
AC3
SOFTWARE
MET A:87 , GLY A:90 , GLN A:91 , ASP A:94 , ASP A:98 , PHE A:99 , THR A:100 , 0KY A:1602 , HOH A:1701 , ARG C:239 , GLU C:242 , MET C:243 , THR C:329 , PHE C:332 , ARG C:333 , GLY C:335 , HIS C:336 , LEU C:417 , ARG C:424 , HOH C:702 , HOH C:1035
BINDING SITE FOR RESIDUE HEM C 601
004
AC4
SOFTWARE
ASN C:317 , VAL C:320 , NAG C:603 , FUC C:607 , HOH C:836 , HOH C:853 , HOH D:814
BINDING SITE FOR RESIDUE NAG C 602
005
AC5
SOFTWARE
LEU B:33 , SER C:319 , NAG C:602 , BMA C:604 , HOH C:730 , HOH C:769 , HOH C:819 , HOH C:952 , PHE D:439 , GLY D:441 , HOH D:814
BINDING SITE FOR RESIDUE NAG C 603
006
AC6
SOFTWARE
NAG C:603 , MAN C:605 , MAN C:606 , HOH C:775 , PHE D:439 , HOH D:817
BINDING SITE FOR RESIDUE BMA C 604
007
AC7
SOFTWARE
BMA C:604 , HOH C:756 , LYS D:308
BINDING SITE FOR RESIDUE MAN C 605
008
AC8
SOFTWARE
BMA C:604 , HOH C:763 , HOH C:817 , PHE D:439 , LYS D:505 , FUC D:606
BINDING SITE FOR RESIDUE MAN C 606
009
AC9
SOFTWARE
ARG C:504 , NAG C:602 , HOH C:1007 , MAN D:605 , HOH D:915
BINDING SITE FOR RESIDUE FUC C 607
010
BC1
SOFTWARE
ASN C:189 , ASN C:192 , ALA C:198 , VAL C:199 , GLN C:201 , HOH C:825 , HOH C:1016
BINDING SITE FOR RESIDUE NAG C 608
011
BC2
SOFTWARE
ASN C:225 , TRP C:369
BINDING SITE FOR RESIDUE NAG C 609
012
BC3
SOFTWARE
ASP A:96 , THR C:168 , PHE C:170 , ASP C:172 , SER C:174
BINDING SITE FOR RESIDUE CA C 610
013
BC4
SOFTWARE
ARG B:31 , TRP B:32 , HOH B:305 , ASN D:326 , VAL D:327 , TRP D:436
BINDING SITE FOR RESIDUE CL B 201
014
BC5
SOFTWARE
MET B:87 , GLY B:90 , GLN B:91 , ASP B:94 , ASP B:98 , PHE B:99 , THR B:100 , 0KY B:203 , HOH B:354 , HOH B:363 , ARG D:239 , GLU D:242 , MET D:243 , THR D:329 , PHE D:332 , ARG D:333 , GLY D:335 , HIS D:336 , ILE D:339 , PHE D:407 , LEU D:417 , ARG D:424
BINDING SITE FOR RESIDUE HEM B 202
015
BC6
SOFTWARE
GLU B:102 , HEM B:202 , HOH B:366 , ARG D:239 , GLU D:242 , PHE D:407
BINDING SITE FOR RESIDUE 0KY B 203
016
BC7
SOFTWARE
HOH C:721 , ASN D:317 , NAG D:602 , FUC D:606 , HOH D:716 , HOH D:819
BINDING SITE FOR RESIDUE NAG D 601
017
BC8
SOFTWARE
LEU A:33 , ARG C:438 , PHE C:439 , GLY C:441 , HOH C:721 , HOH C:948 , SER D:319 , NAG D:601 , BMA D:603 , FUC D:606 , HOH D:835 , HOH D:878 , HOH D:914
BINDING SITE FOR RESIDUE NAG D 602
018
BC9
SOFTWARE
PHE C:439 , HOH C:848 , NAG D:602 , MAN D:604 , MAN D:605
BINDING SITE FOR RESIDUE BMA D 603
019
CC1
SOFTWARE
LYS C:308 , BMA D:603
BINDING SITE FOR RESIDUE MAN D 604
020
CC2
SOFTWARE
PHE C:439 , LYS C:505 , FUC C:607 , HOH C:904 , HOH C:1007 , BMA D:603 , HOH D:915 , HOH D:939
BINDING SITE FOR RESIDUE MAN D 605
021
CC3
SOFTWARE
MAN C:606 , NAG D:601 , NAG D:602
BINDING SITE FOR RESIDUE FUC D 606
022
CC4
SOFTWARE
ASN D:189 , ASN D:192 , ALA D:198 , VAL D:199 , GLN D:201 , HOH D:719 , HOH D:764
BINDING SITE FOR RESIDUE NAG D 607
023
CC5
SOFTWARE
ASN D:225 , TRP D:369 , LEU D:373 , HOH D:950
BINDING SITE FOR RESIDUE NAG D 608
024
CC6
SOFTWARE
ASP B:96 , THR D:168 , PHE D:170 , ASP D:172 , SER D:174
BINDING SITE FOR RESIDUE CA D 609
025
CC7
SOFTWARE
TRP E:32 , ASN G:326 , VAL G:327 , TRP G:436
BINDING SITE FOR RESIDUE CL E 1601
026
CC8
SOFTWARE
MET E:87 , GLY E:90 , GLN E:91 , ASP E:94 , ASP E:98 , PHE E:99 , THR E:100 , HOH E:1703 , HOH E:1726 , HOH E:1752 , ARG G:239 , GLU G:242 , MET G:243 , THR G:329 , PHE G:332 , ARG G:333 , GLY G:335 , HIS G:336 , ILE G:339 , LEU G:417 , ARG G:424 , 0KY G:610
BINDING SITE FOR RESIDUE HEM E 1602
027
CC9
SOFTWARE
ASN G:317 , VAL G:320 , NAG G:602 , FUC G:606 , HOH G:896 , ARG H:438 , HOH H:1772
BINDING SITE FOR RESIDUE NAG G 601
028
DC1
SOFTWARE
LEU F:33 , NAG G:601 , BMA G:603 , HOH G:804 , HOH G:921 , ARG H:438 , PHE H:439 , GLY H:441 , HOH H:1772
BINDING SITE FOR RESIDUE NAG G 602
029
DC2
SOFTWARE
NAG G:602 , MAN G:604 , MAN G:605 , HOH G:796 , HOH G:849 , HOH G:862 , PHE H:439
BINDING SITE FOR RESIDUE BMA G 603
030
DC3
SOFTWARE
BMA G:603 , HOH G:777 , LYS H:308
BINDING SITE FOR RESIDUE MAN G 604
031
DC4
SOFTWARE
TRP F:32 , BMA G:603 , PHE H:439 , LYS H:505 , FUC H:606 , HOH H:1828
BINDING SITE FOR RESIDUE MAN G 605
032
DC5
SOFTWARE
NAG G:601 , MAN H:605
BINDING SITE FOR RESIDUE FUC G 606
033
DC6
SOFTWARE
ASN G:189 , ASN G:192 , LEU G:196 , ALA G:198 , VAL G:199 , GLN G:201 , HOH G:813 , HOH G:905 , HOH G:940
BINDING SITE FOR RESIDUE NAG G 607
034
DC7
SOFTWARE
ASN G:225 , SER G:227 , ALA G:228 , TRP G:369 , HOH G:891
BINDING SITE FOR RESIDUE NAG G 608
035
DC8
SOFTWARE
ASP E:96 , THR G:168 , PHE G:170 , ASP G:172 , SER G:174
BINDING SITE FOR RESIDUE CA G 609
036
DC9
SOFTWARE
GLU E:102 , HEM E:1602 , ARG G:239 , GLU G:242 , PHE G:407 , HOH G:709
BINDING SITE FOR RESIDUE 0KY G 610
037
EC1
SOFTWARE
TRP F:32 , ASN H:326 , VAL H:327
BINDING SITE FOR RESIDUE CL F 201
038
EC2
SOFTWARE
MET F:87 , GLY F:90 , GLN F:91 , ASP F:94 , ASP F:98 , PHE F:99 , THR F:100 , HOH F:307 , HOH F:362 , ARG H:239 , GLU H:242 , MET H:243 , THR H:329 , PHE H:332 , ARG H:333 , GLY H:335 , HIS H:336 , PHE H:407 , LEU H:417 , LEU H:420 , ARG H:424 , 0KY H:610 , HOH H:1873
BINDING SITE FOR RESIDUE HEM F 202
039
EC3
SOFTWARE
HOH G:848 , ASN H:317 , VAL H:320 , NAG H:602 , FUC H:606 , HOH H:1738 , HOH H:1870
BINDING SITE FOR RESIDUE NAG H 601
040
EC4
SOFTWARE
ARG G:438 , PHE G:439 , GLY G:441 , HOH G:847 , HOH G:848 , SER H:319 , NAG H:601 , BMA H:603 , HOH H:1771
BINDING SITE FOR RESIDUE NAG H 602
041
EC5
SOFTWARE
PHE G:439 , HOH G:923 , NAG H:602 , MAN H:604 , MAN H:605 , HOH H:1863
BINDING SITE FOR RESIDUE BMA H 603
042
EC6
SOFTWARE
LYS G:308 , BMA H:603 , HOH H:1806
BINDING SITE FOR RESIDUE MAN H 604
043
EC7
SOFTWARE
PHE G:439 , LYS G:505 , FUC G:606 , BMA H:603
BINDING SITE FOR RESIDUE MAN H 605
044
EC8
SOFTWARE
MAN G:605 , VAL H:320 , ARG H:504 , NAG H:601
BINDING SITE FOR RESIDUE FUC H 606
045
EC9
SOFTWARE
ASN H:189 , ASN H:192 , ALA H:198 , VAL H:199 , GLN H:201
BINDING SITE FOR RESIDUE NAG H 607
046
FC1
SOFTWARE
ASN H:225 , SER H:227 , TRP H:369 , HOH H:1896
BINDING SITE FOR RESIDUE NAG H 608
047
FC2
SOFTWARE
ASP F:96 , THR H:168 , PHE H:170 , ASP H:172 , SER H:174
BINDING SITE FOR RESIDUE CA H 609
048
FC3
SOFTWARE
HEM F:202 , ARG H:239 , GLU H:242 , PHE H:407 , HOH H:1861
BINDING SITE FOR RESIDUE 0KY H 610
049
FC4
SOFTWARE
ARG I:31 , TRP I:32 , ASN K:326 , VAL K:327 , TRP K:436
BINDING SITE FOR RESIDUE CL I 1601
050
FC5
SOFTWARE
MET I:87 , GLY I:90 , GLN I:91 , ASP I:94 , ASP I:98 , PHE I:99 , THR I:100 , 0KY I:1603 , HOH I:1722 , HOH I:1761 , HOH I:1770 , ARG K:239 , GLU K:242 , MET K:243 , THR K:329 , PHE K:332 , ARG K:333 , GLY K:335 , HIS K:336 , ILE K:339 , LEU K:417 , ARG K:424
BINDING SITE FOR RESIDUE HEM I 1602
051
FC6
SOFTWARE
GLU I:102 , PRO I:103 , HEM I:1602 , HOH I:1701 , HOH I:1764 , HOH I:1773 , ARG K:239 , GLU K:242 , PHE K:407
BINDING SITE FOR RESIDUE 0KY I 1603
052
FC7
SOFTWARE
ASN K:317 , VAL K:320 , NAG K:602 , FUC K:606 , HOH K:740 , HOH K:742 , HOH K:797 , HOH K:807
BINDING SITE FOR RESIDUE NAG K 601
053
FC8
SOFTWARE
LEU J:33 , SER K:319 , NAG K:601 , BMA K:603 , HOH K:742 , HOH K:744 , ARG L:438 , PHE L:439 , GLY L:441 , HOH L:725
BINDING SITE FOR RESIDUE NAG K 602
054
FC9
SOFTWARE
NAG K:602 , MAN K:604 , MAN K:605 , PHE L:439 , HOH L:748
BINDING SITE FOR RESIDUE BMA K 603
055
GC1
SOFTWARE
BMA K:603 , HOH K:774 , HOH K:877 , LYS L:308
BINDING SITE FOR RESIDUE MAN K 604
056
GC2
SOFTWARE
BMA K:603 , HOH K:898 , HOH K:902 , PHE L:439 , LYS L:505 , FUC L:606
BINDING SITE FOR RESIDUE MAN K 605
057
GC3
SOFTWARE
ARG K:504 , NAG K:601 , HOH K:872 , MAN L:605 , HOH L:933
BINDING SITE FOR RESIDUE FUC K 606
058
GC4
SOFTWARE
ASN K:189 , ASN K:192 , LEU K:196 , ALA K:198 , VAL K:199 , GLN K:201 , HOH K:732
BINDING SITE FOR RESIDUE NAG K 607
059
GC5
SOFTWARE
ASN K:225 , TRP K:369 , HOH K:843
BINDING SITE FOR RESIDUE NAG K 608
060
GC6
SOFTWARE
ASP I:96 , THR K:168 , PHE K:170 , ASP K:172 , SER K:174
BINDING SITE FOR RESIDUE CA K 609
061
GC7
SOFTWARE
ARG J:31 , TRP J:32 , ASN L:326 , VAL L:327 , TRP L:436
BINDING SITE FOR RESIDUE CL J 201
062
GC8
SOFTWARE
MET J:87 , GLY J:90 , GLN J:91 , ASP J:94 , ASP J:98 , PHE J:99 , THR J:100 , 0KY J:203 , HOH J:302 , HOH J:331 , HOH J:361 , ARG L:239 , GLU L:242 , MET L:243 , THR L:329 , PHE L:332 , ARG L:333 , GLY L:335 , HIS L:336 , LEU L:417 , ARG L:424
BINDING SITE FOR RESIDUE HEM J 202
063
GC9
SOFTWARE
GLU J:102 , HEM J:202 , HOH J:349 , ARG L:239 , GLU L:242 , PHE L:407
BINDING SITE FOR RESIDUE 0KY J 203
064
HC1
SOFTWARE
HOH K:833 , ASN L:317 , VAL L:320 , NAG L:602 , FUC L:606 , HOH L:792 , HOH L:852 , HOH L:854
BINDING SITE FOR RESIDUE NAG L 601
065
HC2
SOFTWARE
LEU I:33 , ARG K:438 , PHE K:439 , GLY K:441 , HOH K:833 , SER L:319 , NAG L:601 , BMA L:603 , FUC L:606 , HOH L:701 , HOH L:816 , HOH L:835 , HOH L:870
BINDING SITE FOR RESIDUE NAG L 602
066
HC3
SOFTWARE
PHE K:439 , HOH K:734 , NAG L:602 , MAN L:604 , MAN L:605
BINDING SITE FOR RESIDUE BMA L 603
067
HC4
SOFTWARE
LYS K:308 , BMA L:603 , HOH L:870
BINDING SITE FOR RESIDUE MAN L 604
068
HC5
SOFTWARE
PHE K:439 , LYS K:505 , FUC K:606 , HOH K:872 , BMA L:603 , HOH L:933
BINDING SITE FOR RESIDUE MAN L 605
069
HC6
SOFTWARE
MAN K:605 , HOH K:902 , ARG L:504 , NAG L:601 , NAG L:602
BINDING SITE FOR RESIDUE FUC L 606
070
HC7
SOFTWARE
ASN L:189 , ASN L:192 , ALA L:198 , VAL L:199 , GLN L:201 , HOH L:711 , HOH L:759 , HOH L:945
BINDING SITE FOR RESIDUE NAG L 607
071
HC8
SOFTWARE
ASN L:225 , SER L:227 , TRP L:369 , HOH L:948 , HOH L:950
BINDING SITE FOR RESIDUE NAG L 608
072
HC9
SOFTWARE
ASP J:96 , THR L:168 , PHE L:170 , ASP L:172 , SER L:174
BINDING SITE FOR RESIDUE CA L 609
073
IC1
SOFTWARE
ARG M:31 , TRP M:32 , HOH M:1709 , ASN O:326 , VAL O:327
BINDING SITE FOR RESIDUE CL M 1601
074
IC2
SOFTWARE
MET M:87 , GLY M:90 , GLN M:91 , ASP M:94 , ASP M:98 , PHE M:99 , THR M:100 , HOH M:1713 , HOH M:1747 , ARG O:239 , GLU O:242 , MET O:243 , THR O:329 , PHE O:332 , ARG O:333 , GLY O:335 , HIS O:336 , ILE O:339 , ARG O:424 , 0KY O:610
BINDING SITE FOR RESIDUE HEM M 1602
075
IC3
SOFTWARE
ASN O:317 , VAL O:320 , NAG O:602 , FUC O:606 , ARG P:438 , HOH P:785
BINDING SITE FOR RESIDUE NAG O 601
076
IC4
SOFTWARE
LEU N:33 , SER O:319 , NAG O:601 , BMA O:603 , HOH O:743 , HOH O:906 , ARG P:438 , PHE P:439
BINDING SITE FOR RESIDUE NAG O 602
077
IC5
SOFTWARE
NAG O:602 , MAN O:604 , MAN O:605 , PHE P:439 , HOH P:848
BINDING SITE FOR RESIDUE BMA O 603
078
IC6
SOFTWARE
BMA O:603 , LYS P:308
BINDING SITE FOR RESIDUE MAN O 604
079
IC7
SOFTWARE
BMA O:603 , HOH O:905 , HOH O:916 , PHE P:439 , LYS P:505 , FUC P:607
BINDING SITE FOR RESIDUE MAN O 605
080
IC8
SOFTWARE
NAG O:601 , MAN P:606
BINDING SITE FOR RESIDUE FUC O 606
081
IC9
SOFTWARE
ASN O:189 , ASN O:192 , ALA O:198 , VAL O:199 , GLN O:201 , HOH O:805 , HOH O:833
BINDING SITE FOR RESIDUE NAG O 607
082
JC1
SOFTWARE
ARG G:559 , ASN O:225
BINDING SITE FOR RESIDUE NAG O 608
083
JC2
SOFTWARE
ASP M:96 , THR O:168 , PHE O:170 , ASP O:172 , SER O:174
BINDING SITE FOR RESIDUE CA O 609
084
JC3
SOFTWARE
HEM M:1602 , ARG O:239 , GLU O:242 , PHE O:366 , PHE O:407 , HOH O:886
BINDING SITE FOR RESIDUE 0KY O 610
085
JC4
SOFTWARE
ARG N:31 , TRP N:32 , HOH N:332 , ASN P:326 , VAL P:327 , TRP P:436
BINDING SITE FOR RESIDUE CL N 201
086
JC5
SOFTWARE
MET N:87 , GLY N:90 , GLN N:91 , ASP N:94 , ASP N:98 , PHE N:99 , THR N:100 , HOH N:307 , HOH N:345 , ARG P:239 , GLU P:242 , MET P:243 , THR P:329 , PHE P:332 , ARG P:333 , GLY P:335 , HIS P:336 , LEU P:417 , ARG P:424 , 0KY P:614
BINDING SITE FOR RESIDUE HEM N 202
087
JC6
SOFTWARE
ASP N:96 , THR P:168 , PHE P:170 , ASP P:172 , SER P:174
BINDING SITE FOR RESIDUE CA P 601
088
JC7
SOFTWARE
HOH O:736 , ASN P:317 , VAL P:320 , NAG P:603 , FUC P:607 , HOH P:759
BINDING SITE FOR RESIDUE NAG P 602
089
JC8
SOFTWARE
LEU M:33 , PHE O:439 , GLY O:441 , HOH O:736 , SER P:319 , NAG P:602 , BMA P:604 , FUC P:607 , HOH P:701 , HOH P:845 , HOH P:855
BINDING SITE FOR RESIDUE NAG P 603
090
JC9
SOFTWARE
PHE O:439 , HOH O:867 , NAG P:603 , MAN P:605 , MAN P:606 , HOH P:861
BINDING SITE FOR RESIDUE BMA P 604
091
KC1
SOFTWARE
LYS O:308 , BMA P:604 , HOH P:702
BINDING SITE FOR RESIDUE MAN P 605
092
KC2
SOFTWARE
TRP M:32 , PHE O:439 , LYS O:505 , FUC O:606 , BMA P:604 , HOH P:907
BINDING SITE FOR RESIDUE MAN P 606
093
KC3
SOFTWARE
MAN O:605 , HOH O:905 , NAG P:602 , NAG P:603
BINDING SITE FOR RESIDUE FUC P 607
094
KC4
SOFTWARE
ASN P:225 , ALA P:228 , TRP P:369 , HOH P:797
BINDING SITE FOR RESIDUE NAG P 608
095
KC5
SOFTWARE
ASN P:189 , ASN P:192 , ALA P:198 , VAL P:199 , GLN P:201 , NAG P:610 , HOH P:733 , HOH P:781
BINDING SITE FOR RESIDUE NAG P 609
096
KC6
SOFTWARE
LEU C:194 , HOH C:869 , NAG P:609 , BMA P:611 , HOH P:836 , HOH P:862 , HOH P:874 , HOH P:886
BINDING SITE FOR RESIDUE NAG P 610
097
KC7
SOFTWARE
HOH C:869 , NAG P:610 , MAN P:612 , MAN P:613 , HOH P:862 , HOH P:874
BINDING SITE FOR RESIDUE BMA P 611
098
KC8
SOFTWARE
ARG P:202 , GLN P:204 , BMA P:611 , HOH P:736 , HOH P:819 , HOH P:844
BINDING SITE FOR RESIDUE MAN P 612
099
KC9
SOFTWARE
SER C:191 , BMA P:611
BINDING SITE FOR RESIDUE MAN P 613
100
LC1
SOFTWARE
HEM N:202 , ARG P:239 , GLU P:242 , PHE P:407 , HOH P:764 , HOH P:897
BINDING SITE FOR RESIDUE 0KY P 614
[
close Site info
]
SAPs(SNPs)/Variants
(8, 64)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_015377 (Y7C, chain A/B/E/F/I/J/M/N, )
2: VAR_015378 (M85T, chain A/B/E/F/I/J/M/N, )
3: VAR_036517 (R281Q, chain C/D/G/H/K/L/O/P, )
4: VAR_PERM_HUMAN_CCDS11604_1_01 (R281Q, chain C/D/G/H/K/L/O/P, )
5: VAR_015379 (R403W, chain C/D/G/H/K/L/O/P, )
6: VAR_023996 (R438C, chain C/D/G/H/K/L/O/P, )
7: VAR_023997 (E517Q, chain C/D/G/H/K/L/O/P, )
8: VAR_012066 (I551V, chain C/D/G/H/K/L/O/P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015377
Y
173
C
PERM_HUMAN
Disease (MPOD)
78950939
A/B/E/F/I/J/M/N
Y
7
C
2
UniProt
VAR_015378
M
251
T
PERM_HUMAN
Disease (MPOD)
56378716
A/B/E/F/I/J/M/N
M
85
T
3
UniProt
VAR_036517
R
447
Q
PERM_HUMAN
Unclassified
---
C/D/G/H/K/L/O/P
R
281
Q
4
CancerSNP
VAR_PERM_HUMAN_CCDS11604_1_01
*
R
447
Q
PERM_HUMAN
Disease (Colorectal cancer)
---
C/D/G/H/K/L/O/P
R
281
Q
5
UniProt
VAR_015379
R
569
W
PERM_HUMAN
Disease (MPOD)
---
C/D/G/H/K/L/O/P
R
403
W
6
UniProt
VAR_023996
R
604
C
PERM_HUMAN
Polymorphism
35670089
C/D/G/H/K/L/O/P
R
438
C
7
UniProt
VAR_023997
E
683
Q
PERM_HUMAN
Polymorphism
35702888
C/D/G/H/K/L/O/P
E
517
Q
8
UniProt
VAR_012066
I
717
V
PERM_HUMAN
Polymorphism
2759
C/D/G/H/K/L/O/P
I
551
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_1 (C:242-252,D:242-252,G:242-252,H:24...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PERM_HUMAN
408-418
8
C:242-252
D:242-252
G:242-252
H:242-252
K:242-252
L:242-252
O:242-252
P:242-252
[
close PROSITE info
]
Exons
(9, 80)
Info
All Exons
Exon 1.4a (A:1-17 | B:1-17 | - | - | E:1-17 |...)
Exon 1.4c (A:17-60 | B:17-60 | - | - | E:17-6...)
Exon 1.5 (A:61-104 | B:61-104 | C:113-129 | ...)
Exon 1.6 (- | - | C:130-236 | D:130-236 | - ...)
Exon 1.7 (- | - | C:236-289 | D:236-289 | - ...)
Exon 1.9 (- | - | C:290-375 | D:290-375 | - ...)
Exon 1.10 (- | - | C:375-432 | D:375-432 | - ...)
Exon 1.11 (- | - | C:432-511 | D:432-511 | - ...)
Exon 1.12 (- | - | C:511-577 | D:511-578 | - ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.3/1.4a
02: Boundary 1.4a/1.4c
03: Boundary 1.4c/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000225275
1
ENSE00001151667
chr17:
56358296-56357966
331
PERM_HUMAN
1-52
52
0
-
-
1.2
ENST00000225275
2
ENSE00000739393
chr17:
56357820-56357727
94
PERM_HUMAN
52-83
32
0
-
-
1.3
ENST00000225275
3
ENSE00000739378
chr17:
56357375-56357200
176
PERM_HUMAN
83-142
60
0
-
-
1.4a
ENST00000225275
4a
ENSE00000739375
chr17:
56357007-56356884
124
PERM_HUMAN
142-183
42
8
A:1-17
B:1-17
-
-
E:1-17
F:1-17
-
-
I:1-17
J:1-17
-
-
M:1-17
N:1-17
-
-
17
17
-
-
17
17
-
-
17
17
-
-
17
17
-
-
1.4c
ENST00000225275
4c
ENSE00000739356
chr17:
56356787-56356658
130
PERM_HUMAN
183-226
44
8
A:17-60
B:17-60
-
-
E:17-60
F:17-60
-
-
I:17-60
J:17-60
-
-
M:17-60
N:17-60
-
-
44
44
-
-
44
44
-
-
44
44
-
-
44
44
-
-
1.5
ENST00000225275
5
ENSE00000480273
chr17:
56356575-56356369
207
PERM_HUMAN
227-295
69
16
A:61-104
B:61-104
C:113-129
D:113-129
E:61-104
F:61-104
G:113-129
H:113-129
I:61-104
J:61-104
K:113-129
L:113-129
M:61-104
N:61-104
O:113-129
P:113-129
44
44
17
17
44
44
17
17
44
44
17
17
44
44
17
17
1.6
ENST00000225275
6
ENSE00000480274
chr17:
56355506-56355188
319
PERM_HUMAN
296-402
107
8
-
-
C:130-236
D:130-236
-
-
G:130-236
H:130-236
-
-
K:130-236
L:130-236
-
-
O:130-236
P:130-236
-
-
107
107
-
-
107
107
-
-
107
107
-
-
107
107
1.7
ENST00000225275
7
ENSE00000739352
chr17:
56353063-56352903
161
PERM_HUMAN
402-455
54
8
-
-
C:236-289
D:236-289
-
-
G:236-289
H:236-289
-
-
K:236-289
L:236-289
-
-
O:236-289
P:236-289
-
-
54
54
-
-
54
54
-
-
54
54
-
-
54
54
1.9
ENST00000225275
9
ENSE00000480276
chr17:
56351030-56350775
256
PERM_HUMAN
456-541
86
8
-
-
C:290-375
D:290-375
-
-
G:290-375
H:290-375
-
-
K:290-375
L:290-375
-
-
O:290-375
P:290-375
-
-
86
86
-
-
86
86
-
-
86
86
-
-
86
86
1.10
ENST00000225275
10
ENSE00001743415
chr17:
56350279-56350109
171
PERM_HUMAN
541-598
58
8
-
-
C:375-432
D:375-432
-
-
G:375-432
H:375-432
-
-
K:375-432
L:375-432
-
-
O:375-432
P:375-432
-
-
58
58
-
-
58
58
-
-
58
58
-
-
58
58
1.11
ENST00000225275
11
ENSE00000739347
chr17:
56349253-56349016
238
PERM_HUMAN
598-677
80
8
-
-
C:432-511
D:432-511
-
-
G:432-511
H:432-511
-
-
K:432-511
L:432-511
-
-
O:432-511
P:432-511
-
-
80
80
-
-
80
80
-
-
80
80
-
-
80
80
1.12
ENST00000225275
12
ENSE00001151664
chr17:
56348224-56347217
1008
PERM_HUMAN
677-745
69
8
-
-
C:511-577
D:511-578
-
-
G:511-577
H:511-578
-
-
K:511-577
L:511-578
-
-
O:511-578
P:511-578
-
-
67
68
-
-
67
68
-
-
67
68
-
-
68
68
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
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Protein
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All Atoms
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Chain B
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (1.6 MB)
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Biol.Unit 1 (427 KB)
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Biol.Unit 10 (218 KB)
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Biol.Unit 11 (219 KB)
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