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Biol. Unit 2
Info
Asym.Unit (250 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CLADE A/E 93TH057 HIV-1 GP120 CORE IN COMPLEX WITH TS-II-224
Authors
:
Y. D. Kwon, J. M. Lalonde, D. M. Jones, A. W. Sun, J. R. Courter, T. Soeta, T. Kobayashi, A. M. Princiotto, X. Wu, J. Mascola, A. Schon, E. Freire, J. Sodroski, N. Madani, A. B. Smith Iii, P. D. Kwong
Date
:
03 Feb 12 (Deposition) - 02 May 12 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A (1x)
Biol. Unit 2: C (1x)
Keywords
:
Hiv-1 Gp120, Clade A/E, Cd4 Mimic, Ts-Ii-224, Viral Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Lalonde, Y. D. Kwon, D. M. Jones, A. W. Sun, J. R. Courter, T. Soeta, T. Kobayashi, A. M. Princiotto, X. Wu, A. Schon, E. Freire, P. D. Kwong, J. R. Mascola, J. Sodroski, N. Madani, A. B. Smith
Structure-Based Design, Synthesis, And Characterization Of Dual Hotspot Small-Molecule Hiv-1 Entry Inhibitors.
J. Med. Chem. V. 55 4382 2012
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: N-(4-CHLORO-3-FLUOROPHENYL)-N'-(1,... (0LMa)
1b: N-(4-CHLORO-3-FLUOROPHENYL)-N'-(1,... (0LMb)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0LM
1
Ligand/Ion
N-(4-CHLORO-3-FLUOROPHENYL)-N'-(1,2,2,6,6-PENTAMETHYLPIPERIDIN-4-YL)ETHANEDIAMIDE
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(15, 15)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC8 (SOFTWARE)
03: BC5 (SOFTWARE)
04: BC6 (SOFTWARE)
05: BC7 (SOFTWARE)
06: BC8 (SOFTWARE)
07: BC9 (SOFTWARE)
08: CC1 (SOFTWARE)
09: CC2 (SOFTWARE)
10: CC3 (SOFTWARE)
11: CC4 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ASN A:276 , ASN A:279 , HIS C:61
BINDING SITE FOR RESIDUE NAG A 504
02
AC8
SOFTWARE
ASN A:354 , ASN A:355 , PRO C:214 , LYS C:252
BINDING SITE FOR RESIDUE NAG A 508
03
BC5
SOFTWARE
ASN C:234 , THR C:236 , HIS C:352
BINDING SITE FOR RESIDUE NAG C 501
04
BC6
SOFTWARE
HIS C:85 , ASN C:229 , LYS C:231 , ASN C:241
BINDING SITE FOR RESIDUE NAG C 502
05
BC7
SOFTWARE
ASN A:354 , ASN A:355 , SER A:464 , LYS C:252 , ASN C:262 , ARG C:379 , CYS C:445 , VAL C:446 , SER C:447 , NAG C:511 , HOH C:604 , HOH C:606 , HOH C:613 , HOH C:616
BINDING SITE FOR RESIDUE NAG C 503
06
BC8
SOFTWARE
ASN C:276 , THR C:278 , ASN C:279
BINDING SITE FOR RESIDUE NAG C 504
07
BC9
SOFTWARE
GLU C:268 , GLU C:269 , ILE C:270 , ASN C:289
BINDING SITE FOR RESIDUE NAG C 505
08
CC1
SOFTWARE
ASN C:295 , GLU C:332 , LYS C:442 , HOH C:675
BINDING SITE FOR RESIDUE NAG C 506
09
CC2
SOFTWARE
ASN C:334 , THR C:336 , LYS C:337
BINDING SITE FOR RESIDUE NAG C 507
10
CC3
SOFTWARE
GLU C:351 , ASN C:354 , ASN C:355
BINDING SITE FOR RESIDUE NAG C 508
11
CC4
SOFTWARE
THR C:372 , ASN C:386 , THR C:388 , HOH C:622
BINDING SITE FOR RESIDUE NAG C 509
12
CC5
SOFTWARE
ASN C:392 , CYS C:395
BINDING SITE FOR RESIDUE NAG C 510
13
CC6
SOFTWARE
LYS A:350 , ASN A:355 , HOH A:625 , ASN C:262 , SER C:291 , ASN C:448 , NAG C:503 , HOH C:691
BINDING SITE FOR RESIDUE NAG C 511
14
CC7
SOFTWARE
LEU C:52 , ALA C:73 , GLN C:103 , ASP C:107 , HOH C:620
BINDING SITE FOR RESIDUE EPE C 512
15
CC8
SOFTWARE
VAL C:255 , SER C:256 , GLU C:370 , SER C:375 , ASN C:425 , TRP C:427 , GLY C:473 , ASN C:474
BINDING SITE FOR RESIDUE 0LM C 513
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Chain C
Asymmetric Unit 1
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