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4DKI
Biol. Unit 2
Info
Asym.Unit (444 KB)
Biol.Unit 1 (223 KB)
Biol.Unit 2 (220 KB)
Biol.Unit 3 (437 KB)
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(1)
Title
:
STRUCTURAL INSIGHTS INTO THE ANTI- METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS (MRSA) ACTIVITY OF CEFTOBIPROLE
Authors
:
A. L. Lovering, M. C. Gretes, N. C. J. Strynadka
Date
:
03 Feb 12 (Deposition) - 01 Aug 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Enzyme, Hydrolase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. L. Lovering, M. C. Gretes, S. S. Safadi, F. Danel, L. De Castro, M. G. Page, N. C. Strynadka
Structural Insights Into The Anti-Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole.
J. Biol. Chem. V. 287 32096 2012
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
1c: BICARBONATE ION (BCTc)
1d: BICARBONATE ION (BCTd)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: (2R)-2-[(1R)-1-{[(2Z)-2-(5-AMINO-1... (RB6a)
4b: (2R)-2-[(1R)-1-{[(2Z)-2-(5-AMINO-1... (RB6b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BCT
1
Ligand/Ion
BICARBONATE ION
2
CD
-1
Ligand/Ion
CADMIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
RB6
1
Ligand/Ion
(2R)-2-[(1R)-1-{[(2Z)-2-(5-AMINO-1,2,4-THIADIAZOL-3-YL)-2-(HYDROXYIMINO)ACETYL]AMINO}-2-OXOETHYL]-5-({2-OXO-1-[(3R)-PYRROLIDIN-3-YL]-2,5-DIHYDRO-1H-PYRROL-3-YL}METHYL)-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLICACID
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Sites
(13, 13)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
13: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
LYS A:153 , ASP A:323 , LYS B:153 , ASP B:323
BINDING SITE FOR RESIDUE BCT A 704
02
AC5
SOFTWARE
HIS A:143 , GLU A:145 , CL A:708 , GLU B:145
BINDING SITE FOR RESIDUE CD A 705
03
AC7
SOFTWARE
GLY A:135 , HIS A:311 , CL A:709 , ASP B:209
BINDING SITE FOR RESIDUE CD A 707
04
AC8
SOFTWARE
GLU A:145 , THR A:300 , CD A:705 , GLU B:145
BINDING SITE FOR RESIDUE CL A 708
05
AC9
SOFTWARE
GLN A:137 , GLN A:140 , CD A:707 , GLN B:207 , ASP B:209
BINDING SITE FOR RESIDUE CL A 709
06
BC1
SOFTWARE
SER B:403 , LYS B:406 , TYR B:446 , SER B:462 , ASN B:464 , TYR B:519 , GLY B:520 , GLN B:521 , SER B:598 , GLY B:599 , THR B:600 , GLU B:602 , ALA B:642
BINDING SITE FOR RESIDUE RB6 B 701
07
BC2
SOFTWARE
ASP B:35 , GLU B:38
BINDING SITE FOR RESIDUE BCT B 702
08
BC3
SOFTWARE
GLU A:145 , HIS B:143 , GLU B:145 , ASN B:307 , CL B:707
BINDING SITE FOR RESIDUE CD B 703
09
BC4
SOFTWARE
ASP A:209 , GLY B:135 , HIS B:311 , CL B:708
BINDING SITE FOR RESIDUE CD B 704
10
BC5
SOFTWARE
GLU A:59 , HIS B:232
BINDING SITE FOR RESIDUE CD B 705
11
BC6
SOFTWARE
LYS A:434 , ASN B:569 , ASP B:573
BINDING SITE FOR RESIDUE CD B 706
12
BC7
SOFTWARE
GLU A:145 , GLU B:145 , ARG B:298 , THR B:300 , CD B:703
BINDING SITE FOR RESIDUE CL B 707
13
BC8
SOFTWARE
GLN A:207 , GLY B:135 , GLN B:137 , GLN B:140 , HIS B:311 , CD B:704
BINDING SITE FOR RESIDUE CL B 708
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d4dkia1 (A:25-138)
1b: SCOP_d4dkib1 (B:25-138)
2a: SCOP_d4dkia2 (A:139-327)
2b: SCOP_d4dkib2 (B:139-327)
3a: SCOP_d4dkia3 (A:328-668)
3b: SCOP_d4dkib3 (B:328-668)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
Penicillin binding protein 2a (PBP2A), N-terminal domain
(6)
Protein domain
:
Penicillin binding protein 2a (PBP2A), N-terminal domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
1a
d4dkia1
A:25-138
1b
d4dkib1
B:25-138
Fold
:
Penicillin binding protein dimerisation domain
(32)
Superfamily
:
Penicillin binding protein dimerisation domain
(32)
Family
:
Penicillin binding protein dimerisation domain
(12)
Protein domain
:
Penicillin binding protein 2a (PBP2A), middle domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
2a
d4dkia2
A:139-327
2b
d4dkib2
B:139-327
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Penicillin binding protein 2a (PBP2A), C-terminal domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
3a
d4dkia3
A:328-668
3b
d4dkib3
B:328-668
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CATH Domains
(0, 0)
Info
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Pfam Domains
(0, 0)
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Protein & NOT Site
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Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (444 KB)
Header - Asym.Unit
Biol.Unit 1 (223 KB)
Header - Biol.Unit 1
Biol.Unit 2 (220 KB)
Header - Biol.Unit 2
Biol.Unit 3 (437 KB)
Header - Biol.Unit 3
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