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4DK8
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LXR LIGAND BINDING DOMAIN IN COMPLEX WITH PARTIAL AGONIST 5
Authors
:
D. E. Piper, D. J. Kopecky, H. Xu
Date
:
03 Feb 12 (Deposition) - 21 Mar 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ligand Binding Domain, Nuclear Hormone Receptor, Transcription- Peptide-Agonist Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Kopecky, X. Y. Jiao, B. Fisher, S. Mckendry, M. Labelle, D. E. Piper, P. Coward, A. K. Shiau, P. Escaron, J. Danao, A. Chai, J. Jaen, F. Kayser
Discovery Of A New Binding Mode For A Series Of Liver X Receptor Agonists.
Bioorg. Med. Chem. Lett. V. 22 2407 2012
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: N-METHYL-N-(4-{(1S)-2,2,2-TRIFLUOR... (0KTa)
1b: N-METHYL-N-(4-{(1S)-2,2,2-TRIFLUOR... (0KTb)
2a: ACETATE ION (ACTa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0KT
2
Ligand/Ion
N-METHYL-N-(4-{(1S)-2,2,2-TRIFLUORO-1-HYDROXY-1-[1-(2-METHOXYETHYL)-1H-PYRROL-2-YL]ETHYL}PHENYL)BENZENESULFONAMIDE
2
ACT
1
Ligand/Ion
ACETATE ION
3
CA
6
Ligand/Ion
CALCIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:271 , SER A:278 , MET A:312 , LEU A:313 , THR A:316 , PHE A:329 , PHE A:340 , ALA A:343 , ILE A:353 , HIS A:435 , LEU A:442 , LEU A:449 , LEU A:453 , TRP A:457
BINDING SITE FOR RESIDUE 0KT A 501
2
AC2
SOFTWARE
GLU A:325 , ARG A:358 , CA A:505
BINDING SITE FOR RESIDUE ACT A 502
3
AC3
SOFTWARE
GLN A:235 , GLU A:281 , GLU A:315
BINDING SITE FOR RESIDUE CA A 503
4
AC4
SOFTWARE
THR A:334 , ASP A:338 , ASP A:339 , ARG A:342
BINDING SITE FOR RESIDUE CA A 504
5
AC5
SOFTWARE
GLU A:325 , ACT A:502
BINDING SITE FOR RESIDUE CA A 505
6
AC6
SOFTWARE
PHE C:271 , LEU C:274 , LEU C:313 , THR C:316 , PHE C:329 , ALA C:343 , LEU C:345 , ILE C:353 , HIS C:435
BINDING SITE FOR RESIDUE 0KT C 501
7
AC7
SOFTWARE
ASN C:239 , GLU C:315
BINDING SITE FOR RESIDUE CA C 502
8
AC8
SOFTWARE
THR C:334
BINDING SITE FOR RESIDUE CA C 503
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(6, 12)
Info
All Exons
Exon 1.6 (A:218-250 (gaps) | C:219-250 (gaps...)
Exon 1.7 (A:251-310 (gaps) | C:251-310 (gaps...)
Exon 1.8 (A:311-344 | C:311-344)
Exon 1.9b (A:344-413 | C:344-413)
Exon 1.10c (A:414-458 | C:414-459)
Exon 2.15a (B:365-376 | D:365-376)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9b
5: Boundary 1.9b/1.10c
6: Boundary 1.10c/-
7: Boundary 2.14/2.15a
8: Boundary 2.15a/2.16a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000253727
1a
ENSE00001386247
chr19:
50879685-50879833
149
NR1H2_HUMAN
-
0
0
-
-
1.2
ENST00000253727
2
ENSE00001382965
chr19:
50879976-50880083
108
NR1H2_HUMAN
-
0
0
-
-
1.3a
ENST00000253727
3a
ENSE00001124993
chr19:
50880844-50880905
62
NR1H2_HUMAN
1-15
15
0
-
-
1.4
ENST00000253727
4
ENSE00000900338
chr19:
50880990-50881127
138
NR1H2_HUMAN
15-61
47
0
-
-
1.5
ENST00000253727
5
ENSE00000900341
chr19:
50881406-50881696
291
NR1H2_HUMAN
61-158
98
0
-
-
1.6
ENST00000253727
6
ENSE00000900344
chr19:
50881779-50882053
275
NR1H2_HUMAN
158-249
92
2
A:218-250 (gaps)
C:219-250 (gaps)
33
32
1.7
ENST00000253727
7
ENSE00000900347
chr19:
50882259-50882438
180
NR1H2_HUMAN
250-309
60
2
A:251-310 (gaps)
C:251-310 (gaps)
60
60
1.8
ENST00000253727
8
ENSE00000900350
chr19:
50883037-50883136
100
NR1H2_HUMAN
310-343
34
2
A:311-344
C:311-344
34
34
1.9b
ENST00000253727
9b
ENSE00000900352
chr19:
50885223-50885431
209
NR1H2_HUMAN
343-412
70
2
A:344-413
C:344-413
70
70
1.10c
ENST00000253727
10c
ENSE00001124989
chr19:
50885713-50886266
554
NR1H2_HUMAN
413-460
48
2
A:414-458
C:414-459
45
46
2.5c
ENST00000348332
5c
ENSE00001412482
chr2:
24807346-24807429
84
NCOA1_HUMAN
-
0
0
-
-
2.6b
ENST00000348332
6b
ENSE00001353786
chr2:
24866835-24866991
157
NCOA1_HUMAN
-
0
0
-
-
2.7a
ENST00000348332
7a
ENSE00002170964
chr2:
24881530-24881635
106
NCOA1_HUMAN
1-30
30
0
-
-
2.8
ENST00000348332
8
ENSE00001070983
chr2:
24888618-24888784
167
NCOA1_HUMAN
30-86
57
0
-
-
2.9
ENST00000348332
9
ENSE00001781523
chr2:
24896235-24896332
98
NCOA1_HUMAN
86-118
33
0
-
-
2.10
ENST00000348332
10
ENSE00001796214
chr2:
24905820-24905997
178
NCOA1_HUMAN
119-178
60
0
-
-
2.11
ENST00000348332
11
ENSE00001070993
chr2:
24914350-24914529
180
NCOA1_HUMAN
178-238
61
0
-
-
2.12
ENST00000348332
12
ENSE00001070995
chr2:
24916121-24916216
96
NCOA1_HUMAN
238-270
33
0
-
-
2.13
ENST00000348332
13
ENSE00001070992
chr2:
24920527-24920667
141
NCOA1_HUMAN
270-317
48
0
-
-
2.14
ENST00000348332
14
ENSE00001071000
chr2:
24927955-24928102
148
NCOA1_HUMAN
317-366
50
0
-
-
2.15a
ENST00000348332
15a
ENSE00001070985
chr2:
24929437-24930757
1321
NCOA1_HUMAN
366-806
441
2
B:365-376
D:365-376
12
12
2.16a
ENST00000348332
16a
ENSE00000808887
chr2:
24933800-24933980
181
NCOA1_HUMAN
807-867
61
0
-
-
2.17
ENST00000348332
17
ENSE00000808888
chr2:
24949458-24949575
118
NCOA1_HUMAN
867-906
40
0
-
-
2.18
ENST00000348332
18
ENSE00000808889
chr2:
24951177-24951345
169
NCOA1_HUMAN
906-962
57
0
-
-
2.19
ENST00000348332
19
ENSE00000808890
chr2:
24952370-24952684
315
NCOA1_HUMAN
963-1067
105
0
-
-
2.20
ENST00000348332
20
ENSE00000726392
chr2:
24962301-24962402
102
NCOA1_HUMAN
1068-1101
34
0
-
-
2.21
ENST00000348332
21
ENSE00000726395
chr2:
24964653-24965055
403
NCOA1_HUMAN
1102-1236
135
0
-
-
2.22
ENST00000348332
22
ENSE00000808891
chr2:
24974851-24975025
175
NCOA1_HUMAN
1236-1294
59
0
-
-
2.23
ENST00000348332
23
ENSE00000726401
chr2:
24980842-24981025
184
NCOA1_HUMAN
1294-1355
62
0
-
-
2.24
ENST00000348332
24
ENSE00000726404
chr2:
24985556-24985645
90
NCOA1_HUMAN
1356-1385
30
0
-
-
2.26b
ENST00000348332
26b
ENSE00001797482
chr2:
24991090-24993571
2482
NCOA1_HUMAN
1386-1441
56
0
-
-
[
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SCOP Domains
(0, 0)
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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