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4DJF
Asym. Unit
Info
Asym.Unit (300 KB)
Biol.Unit 1 (292 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FOLATE-BOUND CORRINOID IRON-SULFUR PROTEIN (CFESP) IN COMPLEX WITH ITS METHYLTRANSFERASE (METR), CO-CRYSTALLIZED WITH FOLATE AND TI(III) CITRATE REDUCTANT
Authors
:
Y. Kung, C. L. Drennan
Date
:
01 Feb 12 (Deposition) - 14 Mar 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.03
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Tim Barrel, Rossmann Fold, B12-Dependent Methyltransferase, Transferase-Vitamin-Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kung, N. Ando, T. I. Doukov, L. C. Blasiak, G. Bender, J. Seravalli, S. W. Ragsdale, C. L. Drennan
Visualizing Molecular Juggling Within A B12-Dependent Methyltransferase Complex.
Nature V. 484 265 2012
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: 5-METHYL-5,6,7,8-TETRAHYDROFOLIC A... (C2Fa)
1b: 5-METHYL-5,6,7,8-TETRAHYDROFOLIC A... (C2Fb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CO-METHYLCOBALAMIN (COBa)
3b: CO-METHYLCOBALAMIN (COBb)
4a: IRON/SULFUR CLUSTER (SF4a)
4b: IRON/SULFUR CLUSTER (SF4b)
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Label:
No.
Name
Count
Type
Full Name
1
C2F
2
Ligand/Ion
5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID
2
CA
2
Ligand/Ion
CALCIUM ION
3
COB
2
Ligand/Ion
CO-METHYLCOBALAMIN
4
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:6 , MET A:11 , PHE A:12 , ASP A:75 , ASN A:96 , ILE A:120 , ASP A:160 , SER A:198 , ASN A:199 , GLN A:202 , ARG A:207
BINDING SITE FOR RESIDUE C2F A 300
2
AC2
SOFTWARE
GLY A:222 , ASP A:224
BINDING SITE FOR RESIDUE CA A 301
3
AC3
SOFTWARE
GLU B:6 , MET B:11 , PHE B:12 , ASP B:75 , ASN B:96 , LEU B:122 , ASP B:160 , GLY B:196 , SER B:198 , ASN B:199 , GLN B:202 , ARG B:207
BINDING SITE FOR RESIDUE C2F B 300
4
AC4
SOFTWARE
ASP B:224 , HOH B:402
BINDING SITE FOR RESIDUE CA B 301
5
AC5
SOFTWARE
ASN C:16 , CYS C:17 , GLY C:18 , GLU C:19 , CYS C:20 , CYS C:25 , PHE C:28 , CYS C:42 , TYR C:44
BINDING SITE FOR RESIDUE SF4 C 501
6
AC6
SOFTWARE
VAL B:168 , ASN B:199 , GLN B:202 , ASN B:203 , PRO C:318 , TYR C:338 , VAL C:339 , THR C:340 , THR C:346 , GLY C:370 , LEU C:371 , SER C:372 , VAL C:373 , THR C:375 , ALA C:378 , ASP C:379 , ILE C:406 , PRO C:408 , PRO C:430 , ARG C:431 , ALA C:433
BINDING SITE FOR RESIDUE COB C 502
7
AC7
SOFTWARE
PRO E:13 , LYS E:15 , ASN E:16 , CYS E:17 , GLY E:18 , CYS E:20 , CYS E:25 , CYS E:42
BINDING SITE FOR RESIDUE SF4 E 501
8
AC8
SOFTWARE
VAL A:168 , GLN A:202 , ASN A:203 , TYR E:338 , VAL E:339 , THR E:340 , PHE E:343 , THR E:346 , VAL E:350 , GLY E:370 , LEU E:371 , SER E:372 , VAL E:373 , LEU E:374 , THR E:375 , ALA E:378 , ASP E:379 , ILE E:406 , PRO E:408 , PRO E:430 , ARG E:431 , ALA E:433
BINDING SITE FOR RESIDUE COB E 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PTERIN_BINDING (A:1-246,B:1-246)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PTERIN_BINDING
PS50972
Pterin-binding domain profile.
ACSE_MOOTH
1-246
2
A:1-246
B:1-246
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4djfa_ (A:)
1b: SCOP_d4djfb_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Dihydropteroate synthetase-like
(59)
Family
:
Methyltetrahydrofolate-utiluzing methyltransferases
(16)
Protein domain
:
automated matches
(7)
Moorella thermoacetica [TaxId: 1525]
(4)
1a
d4djfa_
A:
1b
d4djfb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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