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Getting 'Exon' information from database.
4DJ9
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
HUMAN VINCULIN HEAD DOMAIN VH1 (RESIDUES 1-258) IN COMPLEX WITH THE TALIN VINCULIN BINDING SITE 50 (VBS50, RESIDUES 2078-2099)
Authors
:
S. D. Yogesha, E. S. Rangarajan, C. Vonrhein, G. Bricogne, T. Izard
Date
:
01 Feb 12 (Deposition) - 29 Feb 12 (Release) - 16 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cytoskeleton, Focal Adhesion, Protein-Protein Interaction, Four-Helix Bundle, Cell Adhesion, F-Actin, Cytosol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. D. Yogesha, E. S. Rangarajan, C. Vonrhein, G. Bricogne, T. Izard
Crystal Structure Of Vinculin In Complex With Vinculin Binding Site 50 (Vbs50), The Integrin Binding Site 2 (Ibs2) Of Talin.
Protein Sci. V. 21 583 2012
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_037667 (V234L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_037667
V
234
L
VINC_HUMAN
Polymorphism
17853882
A
V
234
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: VINCULIN_1 (A:162-182)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VINCULIN_1
PS00663
Vinculin family talin-binding region signature.
VINC_HUMAN
162-182
1
A:162-182
[
close PROSITE info
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Exons
(7, 7)
Info
All Exons
Exon 1.1a (A:3-56 (gaps))
Exon 1.2a (A:57-80)
Exon 1.4 (A:80-130)
Exon 1.5 (A:131-167)
Exon 1.6 (A:167-208)
Exon 1.7a (A:208-254 (gaps))
Exon 2.46b (B:2078-2099)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
7: Boundary 1.7a/1.8
8: Boundary 2.45e/2.46b
9: Boundary 2.46b/2.47a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000211998
1a
ENSE00002146319
chr10:
75757872-75758133
262
VINC_HUMAN
1-56
56
1
A:3-56 (gaps)
54
1.2a
ENST00000211998
2a
ENSE00001607712
chr10:
75802841-75802911
71
VINC_HUMAN
57-80
24
1
A:57-80
24
1.4
ENST00000211998
4
ENSE00001024254
chr10:
75830428-75830578
151
VINC_HUMAN
80-130
51
1
A:80-130
51
1.5
ENST00000211998
5
ENSE00001024245
chr10:
75830733-75830841
109
VINC_HUMAN
131-167
37
1
A:131-167
37
1.6
ENST00000211998
6
ENSE00001024249
chr10:
75832488-75832610
123
VINC_HUMAN
167-208
42
1
A:167-208
42
1.7a
ENST00000211998
7a
ENSE00001024263
chr10:
75834501-75834661
161
VINC_HUMAN
208-261
54
1
A:208-254 (gaps)
47
1.8
ENST00000211998
8
ENSE00001024248
chr10:
75842212-75842302
91
VINC_HUMAN
262-292
31
0
-
-
1.9a
ENST00000211998
9a
ENSE00000986356
chr10:
75843124-75843271
148
VINC_HUMAN
292-341
50
0
-
-
1.10
ENST00000211998
10
ENSE00000986357
chr10:
75848954-75849107
154
VINC_HUMAN
341-392
52
0
-
-
1.11
ENST00000211998
11
ENSE00000986358
chr10:
75849781-75849956
176
VINC_HUMAN
393-451
59
0
-
-
1.12
ENST00000211998
12
ENSE00001024262
chr10:
75854029-75854219
191
VINC_HUMAN
451-515
65
0
-
-
1.13
ENST00000211998
13
ENSE00000986360
chr10:
75855414-75855613
200
VINC_HUMAN
515-581
67
0
-
-
1.14
ENST00000211998
14
ENSE00000986361
chr10:
75856962-75857090
129
VINC_HUMAN
582-624
43
0
-
-
1.15a
ENST00000211998
15a
ENSE00000986362
chr10:
75860706-75860855
150
VINC_HUMAN
625-674
50
0
-
-
1.16
ENST00000211998
16
ENSE00000986363
chr10:
75863578-75863686
109
VINC_HUMAN
675-711
37
0
-
-
1.17c
ENST00000211998
17c
ENSE00000986364
chr10:
75864809-75865111
303
VINC_HUMAN
711-812
102
0
-
-
1.18
ENST00000211998
18
ENSE00000986365
chr10:
75866988-75867112
125
VINC_HUMAN
812-853
42
0
-
-
1.19b
ENST00000211998
19b
ENSE00000834577
chr10:
75868729-75868914
186
VINC_HUMAN
854-915
62
0
-
-
1.20
ENST00000211998
20
ENSE00000709651
chr10:
75871667-75871870
204
VINC_HUMAN
916-983
68
0
-
-
1.21
ENST00000211998
21
ENSE00000709670
chr10:
75873942-75874145
204
VINC_HUMAN
984-1051
68
0
-
-
1.22
ENST00000211998
22
ENSE00000986366
chr10:
75874553-75874657
105
VINC_HUMAN
1052-1086
35
0
-
-
1.23a
ENST00000211998
23a
ENSE00001373600
chr10:
75877781-75879910
2130
VINC_HUMAN
1087-1134
48
0
-
-
2.1a
ENST00000314888
1a
ENSE00001476780
chr9:
35732392-35732072
321
TLN1_HUMAN
-
0
0
-
-
2.2
ENST00000314888
2
ENSE00002140232
chr9:
35725724-35725562
163
TLN1_HUMAN
1-44
44
0
-
-
2.3
ENST00000314888
3
ENSE00000928290
chr9:
35725318-35725221
98
TLN1_HUMAN
44-76
33
0
-
-
2.4
ENST00000314888
4
ENSE00000928289
chr9:
35724956-35724827
130
TLN1_HUMAN
77-120
44
0
-
-
2.5
ENST00000314888
5
ENSE00000928288
chr9:
35724721-35724569
153
TLN1_HUMAN
120-171
52
0
-
-
2.6
ENST00000314888
6
ENSE00000928287
chr9:
35724331-35724189
143
TLN1_HUMAN
171-218
48
0
-
-
2.7a
ENST00000314888
7a
ENSE00000928286
chr9:
35724076-35723949
128
TLN1_HUMAN
219-261
43
0
-
-
2.8
ENST00000314888
8
ENSE00000928285
chr9:
35722918-35722858
61
TLN1_HUMAN
261-281
21
0
-
-
2.9
ENST00000314888
9
ENSE00000928284
chr9:
35722220-35722116
105
TLN1_HUMAN
282-316
35
0
-
-
2.10
ENST00000314888
10
ENSE00001688684
chr9:
35721800-35721645
156
TLN1_HUMAN
317-368
52
0
-
-
2.11
ENST00000314888
11
ENSE00000928282
chr9:
35720910-35720809
102
TLN1_HUMAN
369-402
34
0
-
-
2.12
ENST00000314888
12
ENSE00000928281
chr9:
35720506-35720430
77
TLN1_HUMAN
403-428
26
0
-
-
2.13
ENST00000314888
13
ENSE00000928280
chr9:
35720216-35720036
181
TLN1_HUMAN
428-488
61
0
-
-
2.14
ENST00000314888
14
ENSE00000928279
chr9:
35719850-35719737
114
TLN1_HUMAN
489-526
38
0
-
-
2.15
ENST00000314888
15
ENSE00000928278
chr9:
35719624-35719516
109
TLN1_HUMAN
527-563
37
0
-
-
2.16
ENST00000314888
16
ENSE00000928277
chr9:
35719279-35719071
209
TLN1_HUMAN
563-632
70
0
-
-
2.17
ENST00000314888
17
ENSE00000928276
chr9:
35718907-35718809
99
TLN1_HUMAN
633-665
33
0
-
-
2.18
ENST00000314888
18
ENSE00000928275
chr9:
35717783-35717616
168
TLN1_HUMAN
666-721
56
0
-
-
2.19
ENST00000314888
19
ENSE00000928274
chr9:
35717437-35717143
295
TLN1_HUMAN
722-820
99
0
-
-
2.20
ENST00000314888
20
ENSE00000928273
chr9:
35716553-35716387
167
TLN1_HUMAN
820-875
56
0
-
-
2.21
ENST00000314888
21
ENSE00000928272
chr9:
35715184-35715056
129
TLN1_HUMAN
876-918
43
0
-
-
2.22
ENST00000314888
22
ENSE00000928271
chr9:
35714873-35714757
117
TLN1_HUMAN
919-957
39
0
-
-
2.23
ENST00000314888
23
ENSE00000928270
chr9:
35714684-35714571
114
TLN1_HUMAN
958-995
38
0
-
-
2.24
ENST00000314888
24
ENSE00001429527
chr9:
35714370-35714236
135
TLN1_HUMAN
996-1040
45
0
-
-
2.25
ENST00000314888
25
ENSE00000928268
chr9:
35714078-35713950
129
TLN1_HUMAN
1041-1083
43
0
-
-
2.26
ENST00000314888
26
ENSE00000928267
chr9:
35713295-35713193
103
TLN1_HUMAN
1084-1118
35
0
-
-
2.27
ENST00000314888
27
ENSE00000928266
chr9:
35713040-35712832
209
TLN1_HUMAN
1118-1187
70
0
-
-
2.28
ENST00000314888
28
ENSE00000928265
chr9:
35712121-35712002
120
TLN1_HUMAN
1188-1227
40
0
-
-
2.29
ENST00000314888
29
ENSE00000928264
chr9:
35711789-35711592
198
TLN1_HUMAN
1228-1293
66
0
-
-
2.30
ENST00000314888
30
ENSE00000928263
chr9:
35711391-35711252
140
TLN1_HUMAN
1294-1340
47
0
-
-
2.31
ENST00000314888
31
ENSE00000928262
chr9:
35711079-35710986
94
TLN1_HUMAN
1340-1371
32
0
-
-
2.32
ENST00000314888
32
ENSE00000928261
chr9:
35710883-35710794
90
TLN1_HUMAN
1372-1401
30
0
-
-
2.33
ENST00000314888
33
ENSE00000928260
chr9:
35710680-35710558
123
TLN1_HUMAN
1402-1442
41
0
-
-
2.34
ENST00000314888
34
ENSE00000928259
chr9:
35708481-35708338
144
TLN1_HUMAN
1443-1490
48
0
-
-
2.35b
ENST00000314888
35b
ENSE00000928258
chr9:
35707889-35707728
162
TLN1_HUMAN
1491-1544
54
0
-
-
2.36b
ENST00000314888
36b
ENSE00000928257
chr9:
35707485-35707345
141
TLN1_HUMAN
1545-1591
47
0
-
-
2.37
ENST00000314888
37
ENSE00000928256
chr9:
35707250-35707069
182
TLN1_HUMAN
1592-1652
61
0
-
-
2.38
ENST00000314888
38
ENSE00000928255
chr9:
35706897-35706765
133
TLN1_HUMAN
1652-1696
45
0
-
-
2.39
ENST00000314888
39
ENSE00000928254
chr9:
35706548-35706447
102
TLN1_HUMAN
1697-1730
34
0
-
-
2.40
ENST00000314888
40
ENSE00000928253
chr9:
35706363-35706193
171
TLN1_HUMAN
1731-1787
57
0
-
-
2.41b
ENST00000314888
41b
ENSE00000928252
chr9:
35706108-35705959
150
TLN1_HUMAN
1788-1837
50
0
-
-
2.42
ENST00000314888
42
ENSE00000928251
chr9:
35705848-35705747
102
TLN1_HUMAN
1838-1871
34
0
-
-
2.43
ENST00000314888
43
ENSE00000928250
chr9:
35705667-35705548
120
TLN1_HUMAN
1872-1911
40
0
-
-
2.44a
ENST00000314888
44a
ENSE00000928249
chr9:
35704812-35704666
147
TLN1_HUMAN
1912-1960
49
0
-
-
2.45a
ENST00000314888
45a
ENSE00000928248
chr9:
35704495-35704329
167
TLN1_HUMAN
1961-2016
56
0
-
-
2.45e
ENST00000314888
45e
ENSE00000928247
chr9:
35704171-35703988
184
TLN1_HUMAN
2016-2077
62
0
-
-
2.46b
ENST00000314888
46b
ENSE00000928246
chr9:
35703897-35703772
126
TLN1_HUMAN
2078-2119
42
1
B:2078-2099
22
2.47a
ENST00000314888
47a
ENSE00000928245
chr9:
35703673-35703557
117
TLN1_HUMAN
2120-2158
39
0
-
-
2.48
ENST00000314888
48
ENSE00000928244
chr9:
35700373-35700188
186
TLN1_HUMAN
2159-2220
62
0
-
-
2.49
ENST00000314888
49
ENSE00000928243
chr9:
35700078-35699971
108
TLN1_HUMAN
2221-2256
36
0
-
-
2.50
ENST00000314888
50
ENSE00000928242
chr9:
35699458-35699353
106
TLN1_HUMAN
2257-2292
36
0
-
-
2.51b
ENST00000314888
51b
ENSE00000928241
chr9:
35699153-35699029
125
TLN1_HUMAN
2292-2333
42
0
-
-
2.52
ENST00000314888
52
ENSE00000928240
chr9:
35698930-35698805
126
TLN1_HUMAN
2334-2375
42
0
-
-
2.53
ENST00000314888
53
ENSE00000928239
chr9:
35698676-35698614
63
TLN1_HUMAN
2376-2396
21
0
-
-
2.54
ENST00000314888
54
ENSE00001802524
chr9:
35698502-35698320
183
TLN1_HUMAN
2397-2457
61
0
-
-
2.55b
ENST00000314888
55b
ENSE00000928237
chr9:
35698169-35698041
129
TLN1_HUMAN
2458-2500
43
0
-
-
2.56b
ENST00000314888
56b
ENSE00001900879
chr9:
35697913-35696945
969
TLN1_HUMAN
2501-2541
41
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4dj9a1 (A:3-128)
1b: SCOP_d4dj9a2 (A:129-254)
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
alpha-catenin/vinculin-like
(25)
Family
:
alpha-catenin/vinculin
(24)
Protein domain
:
Vinculin
(12)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d4dj9a1
A:3-128
1b
d4dj9a2
A:129-254
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