PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4DHT
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (97 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SMALL-MOLECULE INHIBITORS OF 14-3-3 PROTEIN-PROTEIN INTERACTIONS FROM VIRTUAL SCREENING
Authors
:
P. Thiel, L. Roeglin, O. Kohlbacher, C. Ottmann
Date
:
30 Jan 12 (Deposition) - 31 Jul 13 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Helical Protein, Adapter Protein, Phosphoprotein Binding, Protein Binding-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Thiel, L. Roglin, N. Meissner, S. Hennig, O. Kohlbacher, C. Ottmann
Virtual Screening And Experimental Validation Reveal Novel Small-Molecule Inhibitors Of 14-3-3 Protein-Protein Interactions.
Chem. Commun. (Camb. ) V. 49 8468 2013
[
close entry info
]
Hetero Components
(4, 6)
Info
All Hetero Components
1a: {2-[2-(CYCLOHEXYLAMINO)-2-OXOETHOX... (0KGa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: GLYCEROL (GOLa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0KG
1
Ligand/Ion
{2-[2-(CYCLOHEXYLAMINO)-2-OXOETHOXY]PHENYL}PHOSPHONICACID
2
CL
2
Ligand/Ion
CHLORIDE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
MG
2
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:35 , GLU A:110 , GLU A:188 , HOH A:596 , HOH A:597 , HOH A:622
BINDING SITE FOR RESIDUE MG A 301
2
AC2
SOFTWARE
GLU A:2 , HOH A:405 , HOH A:443
BINDING SITE FOR RESIDUE MG A 302
3
AC3
SOFTWARE
LYS A:9 , HOH A:401 , HOH A:542
BINDING SITE FOR RESIDUE CL A 303
4
AC4
SOFTWARE
LYS A:109
BINDING SITE FOR RESIDUE CL A 304
5
AC5
SOFTWARE
GLU A:110 , MET A:202 , THR A:217 , MET A:220 , ARG A:224 , HOH A:681
BINDING SITE FOR RESIDUE GOL A 305
6
AC6
SOFTWARE
GLY A:53 , ARG A:56 , ARG A:60 , ARG A:129 , TYR A:130 , ASN A:175 , HOH A:458 , HOH A:490 , HOH A:521 , HOH A:586 , HOH A:642
BINDING SITE FOR RESIDUE 0KG A 306
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048095 (M155I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048095
M
155
I
1433S_HUMAN
Polymorphism
11542705
A
M
155
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 1433_1 (A:41-51)
2: 1433_2 (A:213-231)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
1433_1
PS00796
14-3-3 proteins signature 1.
1433S_HUMAN
41-51
1
A:41-51
2
1433_2
PS00797
14-3-3 proteins signature 2.
1433S_HUMAN
213-232
1
A:213-231
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:1-231 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000339276
1
ENSE00001406083
chr1:
27189653-27190947
1295
1433S_HUMAN
1-265
265
1
A:1-231 (gaps)
231
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4dhta_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
14-3-3 protein
(60)
Family
:
14-3-3 protein
(60)
Protein domain
:
automated matches
(43)
Human (Homo sapiens) [TaxId: 9606]
(38)
1a
d4dhta_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (55 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4DHT
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help