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4DHJ
Asym. Unit
Info
Asym.Unit (694 KB)
Biol.Unit 1 (165 KB)
Biol.Unit 2 (163 KB)
Biol.Unit 3 (30 KB)
Biol.Unit 4 (161 KB)
Biol.Unit 5 (162 KB)
Biol.Unit 6 (30 KB)
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(1)
Title
:
THE STRUCTURE OF A CEOTUB1 UBIQUITIN ALDEHYDE UBC13~UB COMPLEX
Authors
:
R. Wiener, X. Zhang, T. Wang, C. Wolberger
Date
:
27 Jan 12 (Deposition) - 22 Feb 12 (Release) - 04 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: E,F,G (1x)
Biol. Unit 3: D (1x)
Biol. Unit 4: I,J,K (1x)
Biol. Unit 5: L,M,N (1x)
Biol. Unit 6: H (1x)
Keywords
:
Ubiquitination, Hydrolase-Signaling Protein-Ligase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Wiener, X. Zhang, T. Wang, C. Wolberger
The Mechanism Of Otub1-Mediated Inhibition Of Ubiquitination.
Nature V. 483 618 2012
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: AMINO-ACETALDEHYDE (GLZa)
1b: AMINO-ACETALDEHYDE (GLZb)
1c: AMINO-ACETALDEHYDE (GLZc)
1d: AMINO-ACETALDEHYDE (GLZd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLZ
4
Mod. Amino Acid
AMINO-ACETALDEHYDE
[
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(5, 24)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (-|-|-|-|-|-|-|-|B:501-576,D:501-57...)
2: UBIQUITIN_CONJUGAT_2 (C:6-138,G:6-138,K:6-138,N:6-138)
3: UBIQUITIN_1 (-|-|-|-|-|-|-|-|B:527-552,D:527-55...)
4: UBIQUITIN_CONJUGAT_1 (C:76-91,G:76-91,K:76-91,N:76-91)
5: OTU (A:77-274,E:77-274,I:77-274,L:77-27...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
6
-
-
-
-
-
-
-
-
B:501-576
D:501-571
F:501-576
H:501-571
J:501-576
M:501-576
2
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBE2N_HUMAN
6-138
4
C:6-138
G:6-138
K:6-138
N:6-138
3
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
6
-
-
-
-
-
-
-
-
B:527-552
D:527-552
F:527-552
H:527-552
J:527-552
M:527-552
4
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBE2N_HUMAN
76-91
4
C:76-91
G:76-91
K:76-91
N:76-91
5
OTU
PS50802
OTU domain profile.
OTUBL_CAEEL
77-274
4
A:77-274
E:77-274
I:77-274
L:77-274
[
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]
Exons
(5, 22)
Info
All Exons
Exon 1.1 (C:3-10 | G:3-10 | K:3-10 | N:2-10)
Exon 1.3 (C:11-93 | G:11-93 | K:11-93 | N:11...)
Exon 1.4 (C:93-140 | G:93-140 | K:93-140 | N...)
Exon 1.5 (C:140-151 | G:140-150 | K:140-150 ...)
Exon 2.2 (B:501-576 | D:501-571 | F:501-576 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
6: Boundary 2.1/2.2
7: Boundary 2.2/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000318066
1
ENSE00001277525
chr12:
93836026-93835631
396
UBE2N_HUMAN
1-10
10
4
C:3-10
G:3-10
K:3-10
N:2-10
8
8
8
9
1.3
ENST00000318066
3
ENSE00001277541
chr12:
93805075-93804829
247
UBE2N_HUMAN
11-93
83
4
C:11-93
G:11-93
K:11-93
N:11-93
83
83
83
83
1.4
ENST00000318066
4
ENSE00001277519
chr12:
93804650-93804510
141
UBE2N_HUMAN
93-140
48
4
C:93-140
G:93-140
K:93-140
N:93-140
48
48
48
48
1.5
ENST00000318066
5
ENSE00001277538
chr12:
93803855-93802090
1766
UBE2N_HUMAN
140-152
13
4
C:140-151
G:140-150
K:140-150
N:140-151
12
11
11
12
2.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
2.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
6
B:501-576
D:501-571
F:501-576
H:501-571
J:501-576
M:501-576
76
71
76
71
76
76
[
close EXON info
]
SCOP Domains
(3, 14)
Info
All SCOP Domains
1a: SCOP_d4dhjb_ (B:)
1b: SCOP_d4dhjd_ (D:)
1c: SCOP_d4dhjf_ (F:)
1d: SCOP_d4dhjh_ (H:)
1e: SCOP_d4dhjj_ (J:)
1f: SCOP_d4dhjm_ (M:)
2a: SCOP_d4dhja_ (A:)
2b: SCOP_d4dhje_ (E:)
2c: SCOP_d4dhji_ (I:)
2d: SCOP_d4dhjl_ (L:)
3a: SCOP_d4dhjc_ (C:)
3b: SCOP_d4dhjg_ (G:)
3c: SCOP_d4dhjk_ (K:)
3d: SCOP_d4dhjn_ (N:)
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
1a
d4dhjb_
B:
1b
d4dhjd_
D:
1c
d4dhjf_
F:
1d
d4dhjh_
H:
1e
d4dhjj_
J:
1f
d4dhjm_
M:
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
automated matches
(52)
Protein domain
:
automated matches
(52)
Nematode (Caenorhabditis elegans) [TaxId: 6239]
(2)
2a
d4dhja_
A:
2b
d4dhje_
E:
2c
d4dhji_
I:
2d
d4dhjl_
L:
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin conjugating enzyme, UBC
(84)
Human (Homo sapiens), ubc13 [TaxId: 9606]
(5)
3a
d4dhjc_
C:
3b
d4dhjg_
G:
3c
d4dhjk_
K:
3d
d4dhjn_
N:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (694 KB)
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