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4DGR
Asym. Unit
Info
Asym.Unit (231 KB)
Biol.Unit 1 (875 KB)
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(1)
Title
:
INFLUENZA SUBTYPE 9 NEURAMINIDASE BENZOIC ACID INHIBITOR COMPLEX
Authors
:
L. Venkatramani, E. Johnson, G. Kolavi, G. M. Air, W. Brouillette, B. H.
Date
:
26 Jan 12 (Deposition) - 16 May 12 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Inhibitor Complex, Glycan Structure, Neuraminidase, Hydrolase- Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Venkatramani, E. S. Johnson, G. Kolavi, G. M. Air, W. J. Brouillette B. H. Mooers
Crystal Structure Of A New Benzoic Acid Inhibitor Of Influenza Neuraminidase Bound With A New Tilt Induced By Overpacking Sub-Site C6.
Bmc Struct. Biol. V. 12 7 2012
[
close entry info
]
Hetero Components
(9, 23)
Info
All Hetero Components
1a: 4-[2,2-BIS(HYDROXYMETHYL)-5-OXOPYR... (3LVa)
2a: BETA-D-GLUCOSE (BGCa)
2b: BETA-D-GLUCOSE (BGCb)
2c: BETA-D-GLUCOSE (BGCc)
3a: BETA-D-MANNOSE (BMAa)
3b: BETA-D-MANNOSE (BMAb)
4a: CALCIUM ION (CAa)
4b: CALCIUM ION (CAb)
5a: ALPHA-D-GLUCOSE (GLCa)
6a: POTASSIUM ION (Ka)
7a: ALPHA-D-MANNOSE (MANa)
7b: ALPHA-D-MANNOSE (MANb)
7c: ALPHA-D-MANNOSE (MANc)
7d: ALPHA-D-MANNOSE (MANd)
7e: ALPHA-D-MANNOSE (MANe)
7f: ALPHA-D-MANNOSE (MANf)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8c: N-ACETYL-D-GLUCOSAMINE (NAGc)
8d: N-ACETYL-D-GLUCOSAMINE (NAGd)
8e: N-ACETYL-D-GLUCOSAMINE (NAGe)
8f: N-ACETYL-D-GLUCOSAMINE (NAGf)
9a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3LV
1
Ligand/Ion
4-[2,2-BIS(HYDROXYMETHYL)-5-OXOPYRROLIDIN-1-YL]-3-[(DIPROPYLAMINO)METHYL]BENZOIC ACID
2
BGC
3
Ligand/Ion
BETA-D-GLUCOSE
3
BMA
2
Ligand/Ion
BETA-D-MANNOSE
4
CA
2
Ligand/Ion
CALCIUM ION
5
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
6
K
1
Ligand/Ion
POTASSIUM ION
7
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
8
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:199 , ASN A:200 , LEU A:453 , GLY A:454 , GLN A:455 , NAG A:470 , BGC A:484 , HOH A:512 , HOH A:690 , HOH A:698 , HOH A:841 , HOH A:918
BINDING SITE FOR RESIDUE NAG A 469
02
AC2
SOFTWARE
GLN A:392 , GLY A:394 , NAG A:469 , BMA A:471 , MAN A:476 , HOH A:524 , HOH A:841 , HOH A:843 , HOH A:849 , HOH A:859 , HOH A:867
BINDING SITE FOR RESIDUE NAG A 470
03
AC3
SOFTWARE
LEU A:377 , THR A:391 , GLN A:392 , GLY A:394 , NAG A:470 , MAN A:472 , MAN A:475 , HOH A:584 , HOH A:843 , HOH A:866
BINDING SITE FOR RESIDUE BMA A 471
04
AC4
SOFTWARE
ARG A:364 , GLU A:375 , BMA A:471 , MAN A:473 , MAN A:474 , HOH A:848 , HOH A:855 , HOH A:919
BINDING SITE FOR RESIDUE MAN A 472
05
AC5
SOFTWARE
ASP A:330 , ARG A:364 , LYS A:389 , PRO A:390 , MAN A:472 , MAN A:474 , HOH A:864
BINDING SITE FOR RESIDUE MAN A 473
06
AC6
SOFTWARE
ARG A:327 , ASN A:329 , ASP A:330 , ARG A:364 , ILE A:366 , ILE A:368 , MAN A:472 , MAN A:473 , HOH A:650 , HOH A:827 , HOH A:845 , HOH A:855
BINDING SITE FOR RESIDUE MAN A 474
07
AC7
SOFTWARE
BMA A:471 , MAN A:476 , MAN A:477 , HOH A:860 , HOH A:865
BINDING SITE FOR RESIDUE MAN A 475
08
AC8
SOFTWARE
NAG A:470 , MAN A:475 , HOH A:843 , HOH A:867
BINDING SITE FOR RESIDUE MAN A 476
09
AC9
SOFTWARE
MAN A:475 , HOH A:853
BINDING SITE FOR RESIDUE MAN A 477
10
BC1
SOFTWARE
ASP A:83 , PHE A:84 , ASN A:86 , ASN A:234 , NAG A:479 , HOH A:820 , HOH A:846
BINDING SITE FOR RESIDUE NAG A 478
11
BC2
SOFTWARE
ASP A:83 , NAG A:478
BINDING SITE FOR RESIDUE NAG A 479
12
BC3
SOFTWARE
ASN A:146 , TRP A:437 , NAG A:482 , HOH A:615 , HOH A:858
BINDING SITE FOR RESIDUE NAG A 481
13
BC4
SOFTWARE
NAG A:481 , BMA A:483 , HOH A:868
BINDING SITE FOR RESIDUE NAG A 482
14
BC5
SOFTWARE
NAG A:482
BINDING SITE FOR RESIDUE BMA A 483
15
BC6
SOFTWARE
GLN A:455 , TRP A:456 , ASP A:457 , NAG A:469 , HOH A:556 , HOH A:632 , HOH A:690 , HOH A:739 , HOH A:829 , HOH A:852 , HOH A:918
BINDING SITE FOR RESIDUE BGC A 484
16
BC7
SOFTWARE
ARG A:107 , HIS A:144 , ASN A:146 , GLY A:147 , THR A:148 , HIS A:150 , SER A:153 , HOH A:574 , HOH A:705
BINDING SITE FOR RESIDUE GLC A 485
17
BC8
SOFTWARE
GLN A:315 , ASN A:338 , THR A:384 , HOH A:613 , HOH A:783
BINDING SITE FOR RESIDUE BGC A 486
18
BC9
SOFTWARE
ARG A:141 , GLY A:142 , SER A:145 , ASN A:146 , TRP A:438 , PHE A:467 , HOH A:589 , HOH A:615 , HOH A:793 , HOH A:809
BINDING SITE FOR RESIDUE BGC A 487
19
CC1
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ARG A:156 , TRP A:178 , ILE A:222 , ARG A:224 , GLU A:227 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , HOH A:612 , HOH A:747 , HOH A:945
BINDING SITE FOR RESIDUE 3LV A 488
20
CC2
SOFTWARE
HIS A:150 , ASP A:151 , ARG A:152 , HOH A:631 , HOH A:900 , HOH A:949
BINDING SITE FOR RESIDUE PO4 A 489
21
CC3
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , ASN A:347 , HOH A:521 , HOH A:529
BINDING SITE FOR RESIDUE CA A 490
22
CC4
SOFTWARE
HOH A:618
BINDING SITE FOR RESIDUE CA A 491
23
CC5
SOFTWARE
CYS A:129 , HOH A:554 , HOH A:889
BINDING SITE FOR RESIDUE K A 492
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4dgra_ (A:)
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Classes
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Folds
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Superfamilies
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d4dgra_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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