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4DGC
Asym. Unit
Info
Asym.Unit (282 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (57 KB)
Biol.Unit 4 (57 KB)
Biol.Unit 5 (57 KB)
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(1)
Title
:
TRIMCYP CYCLOPHILIN DOMAIN FROM MACACA MULATTA: CYCLOSPORIN A COMPLEX
Authors
:
M. E. C. Caines, K. Bichel, A. J. Price, W. A. Mcewan, L. C. James
Date
:
25 Jan 12 (Deposition) - 08 Feb 12 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,G (1x)
Biol. Unit 3: C,H (1x)
Biol. Unit 4: D,I (1x)
Biol. Unit 5: E,J (1x)
Keywords
:
Anti-Viral Protein, Isomerase-Immunosuppressant Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Caines, K. Bichel, A. J. Price, W. A. Mcewan, G. J. Towers, B. J. Willett, S. M. Freund, L. C. James
Diverse Hiv Viruses Are Targeted By A Conformationally Dynamic Antiviral.
Nat. Struct. Mol. Biol. V. 19 411 2012
[
close entry info
]
Hetero Components
(6, 45)
Info
All Hetero Components
1a: ALPHA-AMINOBUTYRIC ACID (ABAa)
1b: ALPHA-AMINOBUTYRIC ACID (ABAb)
1c: ALPHA-AMINOBUTYRIC ACID (ABAc)
1d: ALPHA-AMINOBUTYRIC ACID (ABAd)
1e: ALPHA-AMINOBUTYRIC ACID (ABAe)
2a: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTa)
2b: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTb)
2c: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTc)
2d: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTd)
2e: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTe)
3a: D-ALANINE (DALa)
3b: D-ALANINE (DALb)
3c: D-ALANINE (DALc)
3d: D-ALANINE (DALd)
3e: D-ALANINE (DALe)
4a: N-METHYLLEUCINE (MLEa)
4b: N-METHYLLEUCINE (MLEb)
4c: N-METHYLLEUCINE (MLEc)
4d: N-METHYLLEUCINE (MLEd)
4e: N-METHYLLEUCINE (MLEe)
4f: N-METHYLLEUCINE (MLEf)
4g: N-METHYLLEUCINE (MLEg)
4h: N-METHYLLEUCINE (MLEh)
4i: N-METHYLLEUCINE (MLEi)
4j: N-METHYLLEUCINE (MLEj)
4k: N-METHYLLEUCINE (MLEk)
4l: N-METHYLLEUCINE (MLEl)
4m: N-METHYLLEUCINE (MLEm)
4n: N-METHYLLEUCINE (MLEn)
4o: N-METHYLLEUCINE (MLEo)
4p: N-METHYLLEUCINE (MLEp)
4q: N-METHYLLEUCINE (MLEq)
4r: N-METHYLLEUCINE (MLEr)
4s: N-METHYLLEUCINE (MLEs)
4t: N-METHYLLEUCINE (MLEt)
5a: N-METHYLVALINE (MVAa)
5b: N-METHYLVALINE (MVAb)
5c: N-METHYLVALINE (MVAc)
5d: N-METHYLVALINE (MVAd)
5e: N-METHYLVALINE (MVAe)
6a: SARCOSINE (SARa)
6b: SARCOSINE (SARb)
6c: SARCOSINE (SARc)
6d: SARCOSINE (SARd)
6e: SARCOSINE (SARe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABA
5
Mod. Amino Acid
ALPHA-AMINOBUTYRIC ACID
2
BMT
5
Mod. Amino Acid
4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3
DAL
5
Mod. Amino Acid
D-ALANINE
4
MLE
20
Mod. Amino Acid
N-METHYLLEUCINE
5
MVA
5
Mod. Amino Acid
N-METHYLVALINE
6
SAR
5
Mod. Amino Acid
SARCOSINE
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:55 , PHE A:60 , GLN A:63 , ASN A:71 , GLY A:72 , THR A:73 , GLU A:81 , ALA A:101 , ASN A:102 , ALA A:103 , GLN A:111 , PHE A:113 , TRP A:121 , HIS A:126 , LYS C:31 , TYR C:79 , HOH F:101
BINDING SITE FOR CHAIN F OF CYCLOSPORIN A
2
AC2
SOFTWARE
PRO A:30 , TYR A:79 , ARG B:55 , PHE B:60 , GLN B:63 , ALA B:101 , ASN B:102 , ALA B:103 , GLN B:111 , PHE B:113 , TRP B:121 , HIS B:126 , GLY C:72 , THR C:73 , GLU C:81 , ALA C:103 , HOH G:101 , HOH G:102 , ABA H:6 , SAR H:7 , MLE H:8
BINDING SITE FOR CHAIN G OF CYCLOSPORIN A
3
AC3
SOFTWARE
GLY B:74 , GLU B:81 , ALA B:103 , ARG C:55 , PHE C:60 , GLN C:63 , ALA C:101 , ASN C:102 , ALA C:103 , GLN C:111 , PHE C:113 , TRP C:121 , HIS C:126 , LYS D:31 , TYR D:79 , ABA G:6 , SAR G:7 , MLE G:8 , HOH H:101
BINDING SITE FOR CHAIN H OF CYCLOSPORIN A
4
AC4
SOFTWARE
ARG D:55 , PHE D:60 , GLN D:63 , ALA D:101 , ASN D:102 , ALA D:103 , GLN D:111 , PHE D:113 , TRP D:121 , HIS D:126 , PRO E:30 , LYS E:31 , TYR E:79 , GLU E:81 , ALA E:103 , ABA J:6 , SAR J:7 , MLE J:8
BINDING SITE FOR CHAIN I OF CYCLOSPORIN A
5
AC5
SOFTWARE
LYS B:31 , TYR B:79 , THR D:73 , GLU D:81 , ARG E:55 , PHE E:60 , GLN E:63 , ALA E:101 , ASN E:102 , GLN E:111 , PHE E:113 , TRP E:121 , HIS E:126 , ABA I:6 , SAR I:7 , MLE I:8
BINDING SITE FOR CHAIN J OF CYCLOSPORIN A
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:7-163,B:7-163,C:7-163,D:7-163,E:...)
2: CSA_PPIASE_1 (A:48-65,B:48-65,C:48-65,D:48-65,E:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIA_MACMU
7-163
5
A:7-163
B:7-163
C:7-163
D:7-163
E:7-163
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIA_MACMU
48-65
5
A:48-65
B:48-65
C:48-65
D:48-65
E:48-65
[
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]
Exons
(5, 25)
Info
All Exons
Exon 1.1 (A:2-23 | B:2-23 | C:2-23 | D:2-23 ...)
Exon 1.2 (A:24-34 | B:24-34 | C:24-34 | D:24...)
Exon 1.3 (A:34-63 | B:34-63 | C:34-63 | D:34...)
Exon 1.4 (A:64-121 | B:64-121 (gaps) | C:64-...)
Exon 1.5 (A:121-164 | B:121-165 | C:121-164 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMMUT00000023383
1
ENSMMUE00000161287
chr3:
81547389-81547272
118
PPIA_MACMU
1-23
23
5
A:2-23
B:2-23
C:2-23
D:2-23
E:2-23
22
22
22
22
22
1.2
ENSMMUT00000023383
2
ENSMMUE00000161290
chr3:
81544822-81544792
31
PPIA_MACMU
24-34
11
5
A:24-34
B:24-34
C:24-34
D:24-34
E:24-34
11
11
11
11
11
1.3
ENSMMUT00000023383
3
ENSMMUE00000161294
chr3:
81544663-81544575
89
PPIA_MACMU
34-63
30
5
A:34-63
B:34-63
C:34-63
D:34-63
E:34-63
30
30
30
30
30
1.4
ENSMMUT00000023383
4
ENSMMUE00000161297
chr3:
81544363-81544191
173
PPIA_MACMU
64-121
58
5
A:64-121
B:64-121 (gaps)
C:64-121 (gaps)
D:64-121 (gaps)
E:64-121 (gaps)
58
58
58
58
58
1.5
ENSMMUT00000023383
5
ENSMMUE00000161300
chr3:
81543093-81542746
348
PPIA_MACMU
121-165
45
5
A:121-164
B:121-165
C:121-164
D:121-164
E:121-164
44
45
44
44
44
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Asymmetric Unit 1
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