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4DGA
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (100 KB)
Biol.Unit 2 (99 KB)
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(1)
Title
:
TRIMCYP CYCLOPHILIN DOMAIN FROM MACACA MULATTA: HIV-1 CA(O-LOOP) COMPLEX
Authors
:
M. E. C. Caines, K. Bichel, A. J. Price, W. A. Mcewan, L. C. James
Date
:
25 Jan 12 (Deposition) - 08 Feb 12 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Anti-Viral Protein, Isomerase-Viral Protein Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. E. Caines, K. Bichel, A. J. Price, W. A. Mcewan, G. J. Towers, B. J. Willett, S. M. Freund, L. C. James
Diverse Hiv Viruses Are Targeted By A Conformationally Dynamic Antiviral.
Nat. Struct. Mol. Biol. V. 19 411 2012
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:7-163,B:7-163)
2: CSA_PPIASE_1 (A:48-65,B:48-65)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIA_MACMU
7-163
2
A:7-163
B:7-163
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIA_MACMU
48-65
2
A:48-65
B:48-65
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Exons
(5, 10)
Info
All Exons
Exon 1.1 (A:2-23 | B:2-23)
Exon 1.2 (A:24-34 | B:24-34)
Exon 1.3 (A:34-63 | B:34-63)
Exon 1.4 (A:64-121 (gaps) | B:64-121 (gaps))
Exon 1.5 (A:121-164 | B:121-165)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMMUT00000023383
1
ENSMMUE00000161287
chr3:
81547389-81547272
118
PPIA_MACMU
1-23
23
2
A:2-23
B:2-23
22
22
1.2
ENSMMUT00000023383
2
ENSMMUE00000161290
chr3:
81544822-81544792
31
PPIA_MACMU
24-34
11
2
A:24-34
B:24-34
11
11
1.3
ENSMMUT00000023383
3
ENSMMUE00000161294
chr3:
81544663-81544575
89
PPIA_MACMU
34-63
30
2
A:34-63
B:34-63
30
30
1.4
ENSMMUT00000023383
4
ENSMMUE00000161297
chr3:
81544363-81544191
173
PPIA_MACMU
64-121
58
2
A:64-121 (gaps)
B:64-121 (gaps)
58
58
1.5
ENSMMUT00000023383
5
ENSMMUE00000161300
chr3:
81543093-81542746
348
PPIA_MACMU
121-165
45
2
A:121-164
B:121-165
44
45
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4dgac_ (C:)
1b: SCOP_d4dgad_ (D:)
2a: SCOP_d4dgaa_ (A:)
2b: SCOP_d4dgab_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Retrovirus capsid protein, N-terminal core domain
(53)
Superfamily
:
Retrovirus capsid protein, N-terminal core domain
(53)
Family
:
Retrovirus capsid protein, N-terminal core domain
(51)
Protein domain
:
HIV-1 capsid protein
(28)
Human immunodeficiency virus type 1 [TaxId: 11676]
(28)
1a
d4dgac_
C:
1b
d4dgad_
D:
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
automated matches
(38)
Rhesus monkey (Macaca mulatta) [TaxId: 9544]
(4)
2a
d4dgaa_
A:
2b
d4dgab_
B:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (202 KB)
Header - Asym.Unit
Biol.Unit 1 (100 KB)
Header - Biol.Unit 1
Biol.Unit 2 (99 KB)
Header - Biol.Unit 2
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