PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4DFZ
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (135 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MYRISTOYLATED K7C CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE IN COMPLEX WITH SP20
Authors
:
A. C. Bastidas, J. M. Steichen, S. S. Taylor
Date
:
24 Jan 12 (Deposition) - 06 Jun 12 (Release) - 02 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : E,I
Biol. Unit 1: E,I (1x)
Keywords
:
Protein Kinase, Myristoylated, Phosphotransferase Of Ser/Thr, Mg, Pki, Pka Regulatory Subunits, Phosphorylated On S139, T197, S338, Myristoylated On G1, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Bastidas, M. S. Deal, J. M. Steichen, M. M. Keshwani, Y. Guo, S. S. Taylor
Role Of N-Terminal Myristylation In The Structure And Regulation Of Camp-Dependent Protein Kinase.
J. Mol. Biol. V. 422 215 2012
[
close entry info
]
Hetero Components
(3, 4)
Info
All Hetero Components
1a: MYRISTIC ACID (MYRa)
2a: PHOSPHOSERINE (SEPa)
2b: PHOSPHOSERINE (SEPb)
3a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MYR
1
Ligand/Ion
MYRISTIC ACID
2
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
3
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY E:1 , ASN E:2 , ALA E:3 , ALA E:4 , SER E:14 , LEU E:152 , GLU E:155 , ASP I:24
BINDING SITE FOR RESIDUE MYR E 401
2
AC2
SOFTWARE
ASN E:2 , ALA E:3 , GLN E:84 , GLU E:86 , ARG E:93 , GLU E:127 , PHE E:129 , SER E:130 , ARG E:133 , ASP E:166 , LYS E:168 , PRO E:169 , GLU E:170 , PHE E:187 , LYS E:189 , ARG E:190 , VAL E:191 , LYS E:192 , LEU E:198 , CYS E:199 , GLY E:200 , GLU E:203 , GLU E:230 , TYR E:235 , PRO E:236 , PHE E:239 , ALA E:240 , ASP E:241 , PRO E:243 , TYR E:247 , ASP E:328 , TYR E:330 , GLU E:349 , MYR E:401 , HOH E:507 , HOH E:537 , HOH E:666 , HOH E:667 , HOH E:711 , HOH I:101 , HOH I:103 , HOH I:104 , HOH I:105 , HOH I:106 , HOH I:107 , HOH I:108 , HOH I:110 , HOH I:111 , HOH I:112 , HOH I:113 , HOH I:114 , HOH I:115 , HOH I:116 , HOH I:117 , HOH I:118 , HOH I:122 , HOH I:123 , HOH I:125 , HOH I:126 , HOH I:127
BINDING SITE FOR CHAIN I OF CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (E:49-72)
2: PROTEIN_KINASE_ST (E:162-174)
3: AGC_KINASE_CTER (E:298-350)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
KAPCA_MOUSE
50-73
1
E:49-72
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
KAPCA_MOUSE
163-175
1
E:162-174
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
KAPCA_MOUSE
299-351
1
E:298-350
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain I
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4DFZ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
