PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4DEV
Asym. Unit
Info
Asym.Unit (517 KB)
Biol.Unit 1 (257 KB)
Biol.Unit 2 (258 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
AN ACETYL XYLAN ESTERASE (EST2A) FROM THE RUMEN BACTERIUM BUTYRIVIBRIO PROTEOCLASTICUS.
Authors
:
M. Till, V. L. Arcus
Date
:
22 Jan 12 (Deposition) - 13 Feb 13 (Release) - 17 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C,F,G (1x)
Biol. Unit 2: B,D,E,H (1x)
Keywords
:
Acetyl Xylan Esterase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Till, D. C. Goldstone, G. T. Attwood, C. D. Moon, W. J. Kelly, V. L. Arcus
Structure And Function Of An Acetyl Xylan Esterase (Est2A) From The Rumen Bacterium Butyrivibrio Proteoclasticus.
Proteins V. 81 911 2013
[
close entry info
]
Hetero Components
(4, 30)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
1m: ACETIC ACID (ACYm)
1n: ACETIC ACID (ACYn)
1o: ACETIC ACID (ACYo)
1p: ACETIC ACID (ACYp)
1q: ACETIC ACID (ACYq)
1r: ACETIC ACID (ACYr)
1s: ACETIC ACID (ACYs)
1t: ACETIC ACID (ACYt)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
4f: DI(HYDROXYETHYL)ETHER (PEGf)
4g: DI(HYDROXYETHYL)ETHER (PEGg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
20
Ligand/Ion
ACETIC ACID
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
PEG
7
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:141 , SER A:142 , GLY A:188 , ASN A:245
BINDING SITE FOR RESIDUE ACY A 401
02
AC2
SOFTWARE
ASN A:11 , SER A:13 , LYS A:16 , HOH A:717 , PRO H:95 , GLN H:127
BINDING SITE FOR RESIDUE ACY A 402
03
AC3
SOFTWARE
GLY A:151 , PHE A:153 , PHE A:346 , GLY A:347 , PRO A:354 , CL A:404 , HOH A:656
BINDING SITE FOR RESIDUE PEG A 403
04
AC4
SOFTWARE
GLY A:148 , SER A:149 , TYR A:150 , GLY A:151 , GLY A:347 , SER A:348 , PEG A:403
BINDING SITE FOR RESIDUE CL A 404
05
AC5
SOFTWARE
ASP B:141 , SER B:142 , GLY B:188 , ASN B:245
BINDING SITE FOR RESIDUE ACY B 401
06
AC6
SOFTWARE
ASN B:11 , SER B:13 , HOH B:540 , THR G:93 , PRO G:95 , GLN G:127
BINDING SITE FOR RESIDUE ACY B 402
07
AC7
SOFTWARE
ASP C:141 , SER C:142 , GLY C:188 , ASN C:245 , HOH C:738
BINDING SITE FOR RESIDUE ACY C 401
08
AC8
SOFTWARE
GLY C:187 , GLY C:188 , TRP C:195 , ASP C:196 , HIS C:201 , HOH C:570
BINDING SITE FOR RESIDUE ACY C 402
09
AC9
SOFTWARE
LEU C:20 , GLY C:21 , ARG C:22 , PHE C:34 , ASN C:35 , GLY C:36 , GLY C:37 , TYR C:181 , HIS C:182 , LEU C:183
BINDING SITE FOR RESIDUE GOL C 403
10
BC1
SOFTWARE
ASP D:141 , SER D:142 , GLY D:188 , ASN D:245
BINDING SITE FOR RESIDUE ACY D 401
11
BC2
SOFTWARE
HOH B:715 , PHE D:71 , TYR D:150
BINDING SITE FOR RESIDUE ACY D 402
12
BC3
SOFTWARE
ASP B:157 , GLN C:5 , ASN D:68 , MET D:90 , GLU D:91 , THR D:94 , PRO D:95 , LYS D:96 , HOH D:519 , HOH D:700
BINDING SITE FOR RESIDUE PEG D 403
13
BC4
SOFTWARE
GLY D:187 , TRP D:195 , ASP D:196 , HIS D:201
BINDING SITE FOR RESIDUE ACY D 404
14
BC5
SOFTWARE
ASN C:11 , ILE C:12 , SER C:13 , LYS C:16 , HOH C:504 , GLN D:127
BINDING SITE FOR RESIDUE ACY D 405
15
BC6
SOFTWARE
ASP E:141 , SER E:142 , GLY E:188 , ASN E:245
BINDING SITE FOR RESIDUE ACY E 401
16
BC7
SOFTWARE
GLU E:66 , ARG E:99 , TYR E:101 , THR E:171 , LYS E:175 , TYR E:181 , HOH E:573
BINDING SITE FOR RESIDUE ACY E 402
17
BC8
SOFTWARE
ASP A:51 , ASP E:154
BINDING SITE FOR RESIDUE ACY E 403
18
BC9
SOFTWARE
PHE E:250 , LYS E:265 , ARG E:267 , THR E:268 , HOH E:696
BINDING SITE FOR RESIDUE PEG E 404
19
CC1
SOFTWARE
LEU E:20 , GLY E:21 , ARG E:22 , PHE E:34 , ASN E:35 , GLY E:36 , GLY E:37 , TYR E:181 , HIS E:182 , LEU E:183
BINDING SITE FOR RESIDUE PEG E 405
20
CC2
SOFTWARE
ASP F:141 , SER F:142 , GLY F:188 , ASN F:245
BINDING SITE FOR RESIDUE ACY F 401
21
CC3
SOFTWARE
ASN E:11 , SER E:13 , HOH E:697 , PRO F:95 , GLN F:127
BINDING SITE FOR RESIDUE ACY F 402
22
CC4
SOFTWARE
HOH A:726 , PHE F:71 , TYR F:150 , HOH F:675
BINDING SITE FOR RESIDUE ACY F 403
23
CC5
SOFTWARE
ASP G:141 , SER G:142 , GLY G:188 , ASN G:245
BINDING SITE FOR RESIDUE ACY G 401
24
CC6
SOFTWARE
PHE G:71 , TYR G:150 , HOH G:679
BINDING SITE FOR RESIDUE ACY G 402
25
CC7
SOFTWARE
ILE G:17 , ASN G:18 , ILE G:19 , ASP G:180
BINDING SITE FOR RESIDUE PEG G 403
26
CC8
SOFTWARE
ARG G:99 , LYS G:175 , ASN G:178 , ALA G:179 , HOH G:604 , HOH G:674
BINDING SITE FOR RESIDUE PEG G 404
27
CC9
SOFTWARE
ALA C:70 , PHE C:71 , SER G:149 , TYR G:150 , GLY G:151 , PRO G:354 , HOH G:691
BINDING SITE FOR RESIDUE GOL G 405
28
DC1
SOFTWARE
ASP H:141 , SER H:142 , GLY H:188 , ASN H:245 , PEG H:403
BINDING SITE FOR RESIDUE ACY H 401
29
DC2
SOFTWARE
PHE H:71 , TYR H:150 , HOH H:619
BINDING SITE FOR RESIDUE ACY H 402
30
DC3
SOFTWARE
TRP H:158 , GLY H:188 , TRP H:195 , ACY H:401 , HOH H:668
BINDING SITE FOR RESIDUE PEG H 403
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (517 KB)
Header - Asym.Unit
Biol.Unit 1 (257 KB)
Header - Biol.Unit 1
Biol.Unit 2 (258 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4DEV
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help