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4DE5
Asym. Unit
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Asym.Unit (100 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
PANTOTHENATE SYNTHETASE IN COMPLEX WITH FRAGMENT 6
Authors
:
H. L. Silvestre
Date
:
19 Jan 12 (Deposition) - 06 Mar 13 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Fragment-Based Drug Discovery, Protein In Complex With Fragment, Alpha Beta/Adenine Nucleotide Alpha Hydrolase-Like, Pantoate-Beta- Alanine Ligase, Pantoate And B-Ala Binding, Ligase-Ligase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. L. Silvestre, T. L. Blundell, C. Abell, A. Ciulli
Integrated Biophysical Approach To Fragment Screening And Validation For Fragment-Based Lead Discovery.
Proc. Natl. Acad. Sci. Usa V. 110 12984 2013
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: (2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-... (0JDa)
1b: (2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-... (0JDb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: ETHANOL (EOHa)
3b: ETHANOL (EOHb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
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No.
Name
Count
Type
Full Name
1
0JD
2
Ligand/Ion
(2S)-2,3-DIHYDRO-1,4-BENZODIOXINE-2-CARBOXYLIC ACID
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
EOH
2
Ligand/Ion
ETHANOL
4
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:38 , THR A:39 , MET A:40 , HIS A:47 , VAL A:143 , GLN A:164 , HOH A:501 , HOH A:574 , HOH A:655
BINDING SITE FOR RESIDUE 0JD A 401
2
AC2
SOFTWARE
MET A:109 , TYR A:110 , PRO A:111 , ASP A:112 , GLY A:113 , LEU A:114 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE GOL A 402
3
AC3
SOFTWARE
PRO A:111 , ASP A:112
BINDING SITE FOR RESIDUE GOL A 403
4
AC4
SOFTWARE
ARG A:115 , THR A:117 , HOH A:620 , GLN B:119 , PRO B:120
BINDING SITE FOR RESIDUE EOH A 404
5
AC5
SOFTWARE
MET A:71 , TYR A:110
BINDING SITE FOR RESIDUE EDO A 405
6
AC6
SOFTWARE
PRO B:38 , THR B:39 , MET B:40 , HIS B:47 , VAL B:143 , PHE B:157 , GLN B:164
BINDING SITE FOR RESIDUE 0JD B 401
7
AC7
SOFTWARE
SER B:24 , ARG B:25 , ARG B:28 , VAL B:150 , ARG B:151 , HOH B:664
BINDING SITE FOR RESIDUE EOH B 402
8
AC8
SOFTWARE
ILE B:3 , PRO B:4
BINDING SITE FOR RESIDUE EDO B 403
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4de5a_ (A:)
1b: SCOP_d4de5b_ (B:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d4de5a_
A:
1b
d4de5b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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