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4DDL
Biol. Unit 1
Info
Asym.Unit (225 KB)
Biol.Unit 1 (329 KB)
Biol.Unit 2 (320 KB)
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(1)
Title
:
PDE10A CRYSTAL STRUCTURE COMPLEXED WITH NOVEL INHIBITOR
Authors
:
S. Chmait, S. Jordan, J. Zhang
Date
:
18 Jan 12 (Deposition) - 21 Mar 12 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.07
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Phosphodiesterase 10A, Hydrolase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Hu, R. K. Kunz, S. Rumfelt, N. Chen, R. Burli, C. Li, K. L. Andrews, J. Zhang, S. Chmait, J. Kogan, M. Lindstrom, S. A. Hitchcock, J. Treano
Discovery Of Potent, Selective, And Metabolically Stable 4-(Pyridin-3-Yl)Cinnolines As Novel Phosphodiesterase 10A (Pde10A) Inhibitors.
Bioorg. Med. Chem. Lett. V. 22 2262 2012
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: 2-{1-[5-(6,7-DIMETHOXYCINNOLIN-4-Y... (0JQa)
1b: 2-{1-[5-(6,7-DIMETHOXYCINNOLIN-4-Y... (0JQb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0JQ
3
Ligand/Ion
2-{1-[5-(6,7-DIMETHOXYCINNOLIN-4-YL)-3-METHYLPYRIDIN-2-YL]PIPERIDIN-4-YL}PROPAN-2-OL
2
SO4
21
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:519 , HIS A:553 , ASP A:554 , ASP A:664 , ZN A:1002 , HOH A:1103 , HOH A:1227
BINDING SITE FOR RESIDUE ZN A 1001
02
AC2
SOFTWARE
ASP A:554 , ZN A:1001 , HOH A:1107 , HOH A:1173 , HOH A:1191 , HOH A:1196 , HOH A:1227
BINDING SITE FOR RESIDUE ZN A 1002
03
AC3
SOFTWARE
PHE A:472 , GLU A:473 , ASN A:474 , ARG A:510 , ARG A:558
BINDING SITE FOR RESIDUE SO4 A 1003
04
AC4
SOFTWARE
LYS A:497 , GLY A:597 , HIS A:598 , ASN A:599
BINDING SITE FOR RESIDUE SO4 A 1004
05
AC5
SOFTWARE
VAL A:512 , PRO A:513 , ARG A:558 , GLY A:559 , GLU A:685 , ALA A:688
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
LEU A:537 , LEU A:646 , ASN A:647 , ARG A:652 , LEU B:537 , LEU B:646 , ARG B:652
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
ARG A:510 , ARG A:511
BINDING SITE FOR RESIDUE SO4 A 1007
08
AC8
SOFTWARE
TRP A:672 , PRO A:673 , LYS A:676 , LYS A:694 , ASP A:707
BINDING SITE FOR RESIDUE SO4 A 1008
09
AC9
SOFTWARE
ARG A:617 , LYS A:618
BINDING SITE FOR RESIDUE SO4 A 1009
10
BC1
SOFTWARE
LEU A:625 , LEU A:665 , MET A:703 , GLN A:716 , PHE A:719
BINDING SITE FOR RESIDUE 0JQ A 1010
11
BC9
SOFTWARE
ASN A:645 , ASN A:647 , THR B:539 , ASP B:540
BINDING SITE FOR RESIDUE SO4 B 808
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SAPs(SNPs)/Variants
(2, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_047822 (R706K, chain A, )
2: VAR_047823 (D707N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047822
R
706
K
PDE10_HUMAN
Polymorphism
2224252
A
R
706
K
2
UniProt
VAR_047823
D
707
N
PDE10_HUMAN
Polymorphism
2860112
A
D
707
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: PDEASE_I (A:553-564)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDEASE_I
PS00126
3'5'-cyclic nucleotide phosphodiesterases signature.
PDE10_HUMAN
553-564
3
A:553-564
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4ddla_ (A:)
1b: SCOP_d4ddlb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
automated matches
(60)
Protein domain
:
automated matches
(60)
Human (Homo sapiens) [TaxId: 9606]
(44)
1a
d4ddla_
A:
1b
d4ddlb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (225 KB)
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