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4DDK
Biol. Unit 1
Info
Asym.Unit (105 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
PANTOTHENATE SYNTHETASE IN COMPLEX WITH 1,3-BENZODIOXOLE-5-CARBOXYLIC ACID
Authors
:
H. L. Silvestre
Date
:
18 Jan 12 (Deposition) - 13 Feb 13 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Fragment-Based Drug Discovery, Alpha Beta/Adenine Nucleotide Alpha Hydrolase-Like, Pantoate And B-Ala Binding, Ligase-Ligase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
H. L. Silvestre, T. L. Blundell, C. Abell, A. Ciulli
Integrated Biophysical Approach To Fragment Screening And Validation For Fragment-Based Lead Discovery.
Proc. Natl. Acad. Sci. Usa V. 110 12984 2013
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: 1,3-BENZODIOXOLE-5-CARBOXYLIC ACID (0HNa)
1b: 1,3-BENZODIOXOLE-5-CARBOXYLIC ACID (0HNb)
1c: 1,3-BENZODIOXOLE-5-CARBOXYLIC ACID (0HNc)
2a: 1,2-ETHANEDIOL (EDOa)
3a: ETHANOL (EOHa)
3b: ETHANOL (EOHb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0HN
3
Ligand/Ion
1,3-BENZODIOXOLE-5-CARBOXYLIC ACID
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
EOH
2
Ligand/Ion
ETHANOL
4
GOL
4
Ligand/Ion
GLYCEROL
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:44 , GLY A:46 , HIS A:47 , LEU A:50 , GLY A:158 , VAL A:184 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , HOH A:623 , HOH A:640
BINDING SITE FOR RESIDUE 0HN A 401
02
AC2
SOFTWARE
GLN A:72 , VAL A:142 , GLN A:164 , HOH A:696
BINDING SITE FOR RESIDUE GOL A 402
03
AC3
SOFTWARE
MET A:109 , TYR A:110 , PRO A:111 , ASP A:112 , GLY A:113 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE GOL A 403
04
AC4
SOFTWARE
MET A:40 , GLN A:72 , PHE A:73 , HIS A:135
BINDING SITE FOR RESIDUE EOH A 404
05
AC5
SOFTWARE
HIS B:44 , GLY B:46 , HIS B:47 , LEU B:50 , GLY B:158 , VAL B:184 , PRO B:185 , THR B:186 , VAL B:187 , MET B:195 , HOH B:570 , HOH B:615 , HOH B:702 , HOH B:727
BINDING SITE FOR RESIDUE 0HN B 401
06
AC6
SOFTWARE
ARG B:56 , PRO B:58 , ARG B:154 , HOH B:687
BINDING SITE FOR RESIDUE 0HN B 402
07
AC7
SOFTWARE
PRO B:38 , GLN B:72 , VAL B:139 , GLN B:164 , HOH B:611 , HOH B:725 , HOH B:726 , HOH B:783
BINDING SITE FOR RESIDUE GOL B 403
08
AC8
SOFTWARE
GLY B:244 , ARG B:273 , LEU B:274 , GLY B:275 , HOH B:768 , HOH B:781
BINDING SITE FOR RESIDUE GOL B 404
09
AC9
SOFTWARE
PHE B:67 , VAL B:68 , HOH B:633
BINDING SITE FOR RESIDUE EOH B 405
10
BC1
SOFTWARE
ALA A:226 , ALA B:241 , ALA B:242 , HOH B:728
BINDING SITE FOR RESIDUE EDO B 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4ddka_ (A:)
1b: SCOP_d4ddkb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d4ddka_
A:
1b
d4ddkb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (105 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
Biol.Unit 2 (100 KB)
Header - Biol.Unit 2
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