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Getting 'Exon' information from database.
4DD3
Asym. Unit
Info
Asym.Unit (28 KB)
Biol.Unit 1 (24 KB)
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(1)
Title
:
EVAL PROCESSED HEWL, CARBOPLATIN AQUEOUS PARATONE
Authors
:
S. W. Tanley, A. M. Schreurs, L. M. Kroon-Batenburg, J. Meredith, R. Pre D. Walsh, P. Bryant, C. Levy, J. R. Helliwell
Date
:
18 Jan 12 (Deposition) - 25 Apr 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hen Egg White Lysozyme (Hewl), Platinum, N-Acetylglucosamine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. W. Tanley, A. M. Schreurs, L. M. Kroon-Batenburg, J. Meredith, R. Prendergast, D. Walsh, P. Bryant, C. Levy, J. R. Helliwell
Structural Studies Of The Effect That Dimethyl Sulfoxide (Dmso) Has On Cisplatin And Carboplatin Binding To Histidin In A Protein.
Acta Crystallogr. , Sect. D V. 68 601 2012
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: 2-METHYLPROP-1-ENE (MEBa)
2b: 2-METHYLPROP-1-ENE (MEBb)
2c: 2-METHYLPROP-1-ENE (MEBc)
2d: 2-METHYLPROP-1-ENE (MEBd)
2e: 2-METHYLPROP-1-ENE (MEBe)
2f: 2-METHYLPROP-1-ENE (MEBf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
MEB
6
Ligand/Ion
2-METHYLPROP-1-ENE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:65 , GLY A:67 , ARG A:68 , THR A:69 , SER A:72
BINDING SITE FOR RESIDUE CL A 201
02
AC2
SOFTWARE
TYR A:23 , ASN A:113
BINDING SITE FOR RESIDUE CL A 202
03
AC3
SOFTWARE
ARG A:45 , ASN A:46 , ARG A:128
BINDING SITE FOR RESIDUE MEB A 203
04
AC4
SOFTWARE
CYS A:6 , THR A:47 , GLY A:126 , CYS A:127 , ARG A:128
BINDING SITE FOR RESIDUE MEB A 204
05
AC5
SOFTWARE
HIS A:15 , THR A:89 , ASN A:93
BINDING SITE FOR RESIDUE MEB A 205
06
AC6
SOFTWARE
PHE A:34 , GLY A:117 , TRP A:123 , HOH A:322
BINDING SITE FOR RESIDUE MEB A 206
07
AC7
SOFTWARE
SER A:81 , SER A:85 , SER A:86 , HOH A:337 , HOH A:379
BINDING SITE FOR RESIDUE MEB A 207
08
AC8
SOFTWARE
PHE A:38
BINDING SITE FOR RESIDUE CL A 208
09
AC9
SOFTWARE
ILE A:88
BINDING SITE FOR RESIDUE CL A 209
10
BC1
SOFTWARE
GLN A:57 , ILE A:58 , ASN A:59 , TRP A:63 , ALA A:107 , TRP A:108
BINDING SITE FOR RESIDUE MEB A 210
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-129)
2: LACTALBUMIN_LYSOZYME_1 (A:76-94)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_CHICK
19-147
1
A:1-129
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_CHICK
94-112
1
A:76-94
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-28)
Exon 1.2 (A:28-82)
Exon 1.3 (A:82-108)
Exon 1.4a (A:108-129)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSGALT00000016196
1a
ENSGALE00000107726
chr1:
37298007-37298210
204
LYSC_CHICK
1-46
46
1
A:1-28
28
1.2
ENSGALT00000016196
2
ENSGALE00000107723
chr1:
37299463-37299624
162
LYSC_CHICK
46-100
55
1
A:28-82
55
1.3
ENSGALT00000016196
3
ENSGALE00000107724
chr1:
37301396-37301474
79
LYSC_CHICK
100-126
27
1
A:82-108
27
1.4a
ENSGALT00000016196
4a
ENSGALE00000107725
chr1:
37301556-37301734
179
LYSC_CHICK
126-147
22
1
A:108-129
22
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4dd3a_ (A:)
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Classes
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)
(
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(
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
1a
d4dd3a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (28 KB)
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