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4DCD
Asym. Unit
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Asym.Unit (67 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
1.6A RESOLUTION STRUCTURE OF POLIOVIRUS 3C PROTEASE CONTAINING A COVALENTLY BOUND DIPEPTIDYL INHIBITOR
Authors
:
S. Lovell, K. P. Battaile, Y. Kim, K. -C. Tiew, S. R. Mandadapu, K. R. Alli W. C. Groutas, K. O. Chang
Date
:
17 Jan 12 (Deposition) - 05 Sep 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protease, Poliovirus, Antiviral Inhibitors, Dipeptidyl Inhibitor, Hydrolase-Hydrolase Inhibitor Complex
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Kim, S. Lovell, K. C. Tiew, S. R. Mandadapu, K. R. Alliston, K. P. Battaile, W. C. Groutas, K. O. Chang
Broad-Spectrum Antivirals Against 3C Or 3C-Like Proteases O Picornaviruses, Noroviruses, And Coronaviruses.
J. Virol. V. 86 11754 2012
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
2a: (1S,2S)-2-({N-[(BENZYLOXY)CARBONYL... (K36a)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
K36
1
Ligand/Ion
(1S,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)-1-HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1-SULFONIC ACID
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
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Residues
Description
1
AC1
SOFTWARE
HIS A:-1 , HIS A:-2 , HIS A:0 , LYS A:12
BINDING SITE FOR RESIDUE DTT A 201
2
AC2
SOFTWARE
HIS A:40 , ASN A:126 , LEU A:127 , GLY A:128 , THR A:142 , ARG A:143 , ALA A:144 , CYS A:147 , HIS A:161 , VAL A:162 , GLY A:163 , GLY A:164 , HOH A:324 , HOH A:340 , HOH A:365
BINDING SITE FOR RESIDUE K36 A 202
3
AC3
SOFTWARE
HIS A:-3 , HIS A:-2 , GLY A:1 , PRO A:2 , ARG A:13 , HOH A:377
BINDING SITE FOR RESIDUE SO4 A 203
4
AC4
SOFTWARE
ARG A:79 , ASN A:80 , GLU A:81 , HOH A:376 , HOH A:417
BINDING SITE FOR RESIDUE SO4 A 204
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
(1, 1)
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1a: SCOP_d4dcda_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
automated matches
(47)
Human poliovirus 1 [TaxId: 12081]
(1)
1a
d4dcda_
A:
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CATH Domains
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Asymmetric Unit 1
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