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4DC9
Biol. Unit 2
Info
Asym.Unit (252 KB)
Biol.Unit 1 (245 KB)
Biol.Unit 2 (486 KB)
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(1)
Title
:
HEXAMERIC RING OF METHANOCOCCUS VOLTAE RADA
Authors
:
L. Du, Y. Luo
Date
:
17 Jan 12 (Deposition) - 02 May 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B,C,D,E,F (2x)
Keywords
:
Hexamer, Rada, Recombinase, Homologous Recombination, Reca, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Du, Y. Luo
Structure Of A Hexameric Form Of Rada Recombinase From Methanococcus Voltae.
Acta Crystallogr. , Sect. F V. 68 511 2012
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: NITRATE ION (NO3a)
1b: NITRATE ION (NO3b)
1c: NITRATE ION (NO3c)
1d: NITRATE ION (NO3d)
1e: NITRATE ION (NO3e)
1f: NITRATE ION (NO3f)
1g: NITRATE ION (NO3g)
1h: NITRATE ION (NO3h)
1i: NITRATE ION (NO3i)
1j: NITRATE ION (NO3j)
1k: NITRATE ION (NO3k)
1l: NITRATE ION (NO3l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NO3
24
Ligand/Ion
NITRATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:108 , GLY A:110 , LYS A:111 , THR A:112 , GLN A:113 , NO3 A:402
BINDING SITE FOR RESIDUE NO3 A 401
02
AC2
SOFTWARE
VAL A:106 , PHE A:107 , GLY A:108 , SER A:109 , GLY A:110 , LYS A:111 , THR A:112 , NO3 A:401
BINDING SITE FOR RESIDUE NO3 A 402
03
AC3
SOFTWARE
GLY B:108 , GLY B:110 , LYS B:111 , THR B:112 , GLN B:113 , NO3 B:402
BINDING SITE FOR RESIDUE NO3 B 401
04
AC4
SOFTWARE
VAL B:106 , PHE B:107 , GLY B:108 , SER B:109 , GLY B:110 , LYS B:111 , THR B:112 , NO3 B:401
BINDING SITE FOR RESIDUE NO3 B 402
05
AC5
SOFTWARE
GLY C:108 , GLY C:110 , LYS C:111 , THR C:112 , GLN C:113 , NO3 C:402
BINDING SITE FOR RESIDUE NO3 C 401
06
AC6
SOFTWARE
PHE C:107 , GLY C:108 , SER C:109 , GLY C:110 , LYS C:111 , THR C:112 , NO3 C:401
BINDING SITE FOR RESIDUE NO3 C 402
07
AC7
SOFTWARE
GLY D:108 , GLY D:110 , LYS D:111 , THR D:112 , GLN D:113 , NO3 D:402
BINDING SITE FOR RESIDUE NO3 D 401
08
AC8
SOFTWARE
VAL D:106 , PHE D:107 , GLY D:108 , SER D:109 , GLY D:110 , LYS D:111 , THR D:112 , NO3 D:401
BINDING SITE FOR RESIDUE NO3 D 402
09
AC9
SOFTWARE
GLY E:108 , GLY E:110 , LYS E:111 , THR E:112 , GLN E:113 , NO3 E:402
BINDING SITE FOR RESIDUE NO3 E 401
10
BC1
SOFTWARE
VAL E:106 , PHE E:107 , GLY E:108 , SER E:109 , GLY E:110 , LYS E:111 , THR E:112 , NO3 E:401
BINDING SITE FOR RESIDUE NO3 E 402
11
BC2
SOFTWARE
GLY F:108 , GLY F:110 , LYS F:111 , THR F:112 , GLN F:113 , NO3 F:402
BINDING SITE FOR RESIDUE NO3 F 401
12
BC3
SOFTWARE
VAL F:106 , PHE F:107 , GLY F:108 , SER F:109 , GLY F:110 , LYS F:111 , THR F:112 , NO3 F:401
BINDING SITE FOR RESIDUE NO3 F 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: RECA_2 (A:76-258,B:76-258,C:76-258,D:76-25...)
2: RECA_3 (A:269-322,B:269-322,C:269-322,D:26...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECA_2
PS50162
RecA family profile 1.
RADA_METVO
76-258
12
A:76-258
B:76-258
C:76-258
D:76-258
E:76-258
F:76-258
2
RECA_3
PS50163
RecA family profile 2.
RADA_METVO
263-322
12
A:269-322
B:269-322
C:269-322
D:269-322
E:269-322
F:269-322
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4dc9a_ (A:)
1b: SCOP_d4dc9b_ (B:)
1c: SCOP_d4dc9c_ (C:)
1d: SCOP_d4dc9d_ (D:)
1e: SCOP_d4dc9e_ (E:)
1f: SCOP_d4dc9f_ (F:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
DNA repair protein Rad51, catalytic domain
(18)
Methanococcus voltae [TaxId: 2188]
(10)
1a
d4dc9a_
A:
1b
d4dc9b_
B:
1c
d4dc9c_
C:
1d
d4dc9d_
D:
1e
d4dc9e_
E:
1f
d4dc9f_
F:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asym.Unit (252 KB)
Header - Asym.Unit
Biol.Unit 1 (245 KB)
Header - Biol.Unit 1
Biol.Unit 2 (486 KB)
Header - Biol.Unit 2
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