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4DBS
Biol. Unit 2
Info
Asym.Unit (122 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN 17BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 5 (AKR1C3) IN COMPLEX WITH NADP+ AND 3'-[(4-NITRONAPHTHALEN-1-YL) AMINO]BENZOIC ACID
Authors
:
M. Chen, D. W. Christianson, J. D. Winkler, T. M. Penning
Date
:
16 Jan 12 (Deposition) - 28 Mar 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Castrate Resistant Prostate Cancer, Akr1C3 Selective Inhibitor, Tim Barrel, Steroid Metabolism, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Chen, A. O. Adeniji, B. M. Twenter, J. D. Winkler, D. W. Christianson T. M. Penning
Crystal Structures Of Akr1C3 Containing An N-(Aryl)Amino-Benzoate Inhibitor And A Bifunctional Akr1C3 Inhibitor And Androgen Receptor Antagonist. Therapeutic Leads For Castrate Resistant Prostate Cancer.
Bioorg. Med. Chem. Lett. V. 22 3492 2012
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 3-[(4-NITRONAPHTHALEN-1-YL)AMINO]B... (0HVa)
1b: 3-[(4-NITRONAPHTHALEN-1-YL)AMINO]B... (0HVb)
1c: 3-[(4-NITRONAPHTHALEN-1-YL)AMINO]B... (0HVc)
1d: 3-[(4-NITRONAPHTHALEN-1-YL)AMINO]B... (0HVd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0HV
2
Ligand/Ion
3-[(4-NITRONAPHTHALEN-1-YL)AMINO]BENZOIC ACID
2
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(3, 3)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
GLY B:22 , THR B:23 , TYR B:24 , ASP B:50 , TYR B:55 , HIS B:117 , SER B:166 , ASN B:167 , GLN B:190 , TYR B:216 , SER B:217 , ALA B:218 , LEU B:219 , GLY B:220 , SER B:221 , GLN B:222 , ALA B:253 , LEU B:268 , ALA B:269 , LYS B:270 , SER B:271 , TYR B:272 , ASN B:273 , ARG B:276 , GLN B:279 , ASN B:280 , 0HV B:402 , 0HV B:403 , HOH B:1003 , HOH B:1015 , HOH B:1041 , HOH B:1056 , HOH B:1077 , HOH B:1098 , HOH B:1110 , HOH B:1136
BINDING SITE FOR RESIDUE NAP B 401
2
AC5
SOFTWARE
TYR B:55 , HIS B:117 , ASN B:167 , TYR B:216 , TRP B:227 , PHE B:306 , TYR B:319 , NAP B:401 , 0HV B:403 , HOH B:1041
BINDING SITE FOR RESIDUE 0HV B 402
3
AC6
SOFTWARE
LEU B:54 , TRP B:86 , HIS B:117 , SER B:118 , MET B:120 , LEU B:128 , SER B:129 , ASN B:167 , TRP B:227 , PHE B:311 , NAP B:401 , 0HV B:402 , HOH B:1157
BINDING SITE FOR RESIDUE 0HV B 403
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_032767 (R66Q, chain B, )
2: VAR_061001 (E77G, chain B, )
3: VAR_032768 (R170C, chain B, )
4: VAR_013289 (M175I, chain B, )
5: VAR_032769 (P180S, chain B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032767
R
66
Q
AK1C3_HUMAN
Polymorphism
35961894
B
R
66
Q
2
UniProt
VAR_061001
E
77
G
AK1C3_HUMAN
Polymorphism
41306308
B
E
77
G
3
UniProt
VAR_032768
R
170
C
AK1C3_HUMAN
Polymorphism
35575889
B
R
170
C
4
UniProt
VAR_013289
M
175
I
AK1C3_HUMAN
Polymorphism
1131132
B
M
175
I
5
UniProt
VAR_032769
P
180
S
AK1C3_HUMAN
Polymorphism
34186955
B
P
180
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (B:45-62)
2: ALDOKETO_REDUCTASE_2 (B:151-168)
3: ALDOKETO_REDUCTASE_3 (B:268-283)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
AK1C3_HUMAN
45-62
1
-
B:45-62
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
AK1C3_HUMAN
151-168
1
-
B:151-168
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
AK1C3_HUMAN
268-283
1
-
B:268-283
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4dbsa_ (A:)
1b: SCOP_d4dbsb_ (B:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Prostaglandin d2 11-ketoreductase (akr1c3)
(30)
Human (Homo sapiens) [TaxId: 9606]
(30)
1a
d4dbsa_
A:
1b
d4dbsb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (122 KB)
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