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4DBP
Asym. Unit
Info
Asym.Unit (335 KB)
Biol.Unit 1 (328 KB)
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(1)
Title
:
MYOSIN VI NUCLEOTIDE-FREE (MDINSERT2) D179Y CRYSTAL STRUCTURE
Authors
:
O. Pylypenko, H. L. Sweeney, A. Houdusse
Date
:
16 Jan 12 (Deposition) - 30 Jan 13 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Motor Protein, Motor Protein-Calcium Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Song, O. Pylypenko, Z. Yang, A. Houdusse, L. H. Sweeney
Mutations In Myosin Vi That Cause A Loss Of Coordination Between Heads Provide Insights Into The Structural Changes Underlying Force Generation And The Importance Of Gating
To Be Published
[
close entry info
]
Hetero Components
(4, 25)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
3a: ISOPROPYL ALCOHOL (IPAa)
4a: TERTIARY-BUTYL ALCOHOL (TBUa)
4b: TERTIARY-BUTYL ALCOHOL (TBUb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
3
IPA
1
Ligand/Ion
ISOPROPYL ALCOHOL
4
TBU
2
Ligand/Ion
TERTIARY-BUTYL ALCOHOL
[
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]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:205 , PHE A:206 , LEU A:229 , HOH A:1528
BINDING SITE FOR RESIDUE TBU A 901
02
AC2
SOFTWARE
THR A:158 , LEU A:165 , ASN A:186 , LYS A:208
BINDING SITE FOR RESIDUE TBU A 902
03
AC3
SOFTWARE
MET A:717 , LYS A:720 , ASP A:767 , LYS A:771
BINDING SITE FOR RESIDUE EDO A 903
04
AC4
SOFTWARE
ASN A:284 , ASP A:288 , GLY A:304 , SER A:305 , HOH A:1454
BINDING SITE FOR RESIDUE EDO A 904
05
AC5
SOFTWARE
ARG A:487 , HOH A:1482 , HOH A:1599
BINDING SITE FOR RESIDUE EDO A 905
06
AC6
SOFTWARE
TYR A:100 , LYS A:670 , LEU A:673 , HOH A:1114 , HOH A:1511 , HOH A:1547
BINDING SITE FOR RESIDUE EDO A 906
07
AC7
SOFTWARE
LYS A:550 , HIS A:551 , ASP A:553 , HIS A:554
BINDING SITE FOR RESIDUE EDO A 907
08
AC8
SOFTWARE
VAL A:7 , PRO A:50 , HOH A:1345 , HOH A:1584
BINDING SITE FOR RESIDUE EDO A 908
09
AC9
SOFTWARE
LYS A:142 , LEU A:143 , SER A:144 , SER A:449 , HOH A:1406
BINDING SITE FOR RESIDUE EDO A 909
10
BC1
SOFTWARE
ARG A:556 , HIS A:581 , PHE A:582
BINDING SITE FOR RESIDUE EDO A 910
11
BC2
SOFTWARE
PRO A:50 , LEU A:68 , ASN A:69 , GLY A:761 , HOH A:1588
BINDING SITE FOR RESIDUE EDO A 911
12
BC3
SOFTWARE
ALA A:253 , GLY A:254 , ALA A:255 , GLN A:290 , ILE A:291 , LEU A:292 , ARG A:295 , HIS A:314
BINDING SITE FOR RESIDUE EDO A 912
13
BC4
SOFTWARE
ASN A:275 , THR A:279 , GLU A:299 , HOH A:1034
BINDING SITE FOR RESIDUE EDO A 913
14
BC5
SOFTWARE
THR A:197 , VAL A:198 , ARG A:205 , GLU A:242 , GLU A:461 , PHE A:463 , HOH A:1045
BINDING SITE FOR RESIDUE EDO A 914
15
BC6
SOFTWARE
LYS A:232 , SER A:233 , HOH A:1528
BINDING SITE FOR RESIDUE EDO A 915
16
BC7
SOFTWARE
GLU A:505 , HIS A:507
BINDING SITE FOR RESIDUE EDO A 916
17
BC8
SOFTWARE
GLY A:173 , THR A:174 , GLY A:175 , GLN A:176 , ASP A:177 , ILE A:178 , VAL A:220
BINDING SITE FOR RESIDUE EDO A 917
18
BC9
SOFTWARE
GLU A:231 , SER A:233 , ARG A:234 , VAL A:237 , HOH A:1216
BINDING SITE FOR RESIDUE EDO A 918
19
CC1
SOFTWARE
LYS A:498 , PHE C:65 , PRO C:66
BINDING SITE FOR RESIDUE EDO A 919
20
CC2
SOFTWARE
PHE A:49 , ASN A:69 , GLU A:70 , ASP A:699 , GLN A:702
BINDING SITE FOR RESIDUE EDO A 920
21
CC3
SOFTWARE
ASN A:477 , GLN A:481 , ARG A:667 , SER A:692 , HOH A:1239 , HOH A:1583
BINDING SITE FOR RESIDUE IPA A 921
22
CC4
SOFTWARE
ASP C:20 , ASP C:22 , ASP C:24 , THR C:26 , GLU C:31 , HOH C:303
BINDING SITE FOR RESIDUE CA C 201
23
CC5
SOFTWARE
ASP C:56 , ASP C:58 , ASN C:60 , THR C:62 , GLU C:67
BINDING SITE FOR RESIDUE CA C 202
24
CC6
SOFTWARE
ASP C:93 , ASP C:95 , ASN C:97 , PHE C:99 , GLU C:104
BINDING SITE FOR RESIDUE CA C 203
25
CC7
SOFTWARE
ASP C:129 , ASP C:131 , ASP C:133 , GLN C:135 , GLU C:140
BINDING SITE FOR RESIDUE CA C 204
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(3, 9)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (C:7-42|C:43-72|C:80-115|C:116-147)
2: EF_HAND_1 (C:20-32|C:56-68|C:93-105|C:129-141)
3: MYOSIN_MOTOR (A:57-771)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM_DROME
8-43
44-79
81-116
117-149
4
C:7-42
C:43-72
C:80-115
C:116-147
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM_DROME
21-33
57-69
94-106
130-142
4
C:20-32
C:56-68
C:93-105
C:129-141
3
MYOSIN_MOTOR
PS51456
Myosin motor domain profile.
MYO6_PIG
57-772
1
A:57-771
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4dbpc_ (C:)
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Folds
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(12)
1a
d4dbpc_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain C
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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