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4DBM
Asym. Unit
Info
Asym.Unit (191 KB)
Biol.Unit 1 (185 KB)
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(1)
Title
:
APLYSIA CALIFORNICA-ACHBP IN COMPLEX WITH TRIAZOLE 18
Authors
:
A. Nemecz, J. G. Yamauchi, C. Kim
Date
:
16 Jan 12 (Deposition) - 21 Mar 12 (Release) - 13 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
In Situ Click-Chemistry, Achbp, Nicotinic, Triazole, Tropane, Quinolinone, Cys-Loop Receptor Homologue, Acetylcholine-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. P. Grimster, B. Stump, J. R. Fotsing, T. Weide, T. T. Talley, J. G. Yamauchi, Nemecz, C. Kim, K. Y. Ho, K. B. Sharpless, P. Taylor, V. V. Fokin
Generation Of Candidate Ligands For Nicotinic Acetylcholine Receptors Via In Situ Click Chemistry With A Soluble Acetylcholine Binding Protein Template.
J. Am. Chem. Soc. V. 134 6732 2012
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: (3-EXO)-8,8-DIMETHYL-3-(4-{[(1-MET... (0J0a)
1b: (3-EXO)-8,8-DIMETHYL-3-(4-{[(1-MET... (0J0b)
1c: (3-EXO)-8,8-DIMETHYL-3-(4-{[(1-MET... (0J0c)
1d: (3-EXO)-8,8-DIMETHYL-3-(4-{[(1-MET... (0J0d)
1e: (3-EXO)-8,8-DIMETHYL-3-(4-{[(1-MET... (0J0e)
2a: BETA-D-MANNOSE (BMAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0J0
5
Ligand/Ion
(3-EXO)-8,8-DIMETHYL-3-(4-{[(1-METHYL-2-OXO-1,2-DIHYDROQUINOLIN-4-YL)OXY]METHYL}-1H-1,2,3-TRIAZOL-1-YL)-8-AZONIABICYCLO[3.2.1]OCTANE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:70 , ASN A:74
BINDING SITE FOR RESIDUE NAG A 301
02
AC2
SOFTWARE
TYR A:93 , SER A:146 , TRP A:147
BINDING SITE FOR RESIDUE 0J0 A 302
03
AC3
SOFTWARE
TYR B:93 , TRP B:147 , TYR B:188 , TYR B:195
BINDING SITE FOR RESIDUE 0J0 B 300
04
AC4
SOFTWARE
GLN B:57 , ARG B:79 , VAL B:108 , MET B:116 , ILE B:118 , HOH B:406 , TYR C:93 , SER C:146 , TRP C:147 , VAL C:148 , TYR C:188 , CYS C:190 , CYS C:191 , PRO C:192 , GLU C:193 , TYR C:195
BINDING SITE FOR RESIDUE 0J0 C 300
05
AC5
SOFTWARE
GLN C:57 , ARG C:79 , VAL C:108 , MET C:116 , ILE C:118 , SER D:146 , TRP D:147 , CYS D:190 , CYS D:191 , PRO D:192 , GLU D:193 , TYR D:195
BINDING SITE FOR RESIDUE 0J0 D 300
06
AC6
SOFTWARE
ASN E:74 , NAG E:302
BINDING SITE FOR RESIDUE NAG E 301
07
AC7
SOFTWARE
NAG E:301 , BMA E:303 , MAN E:305
BINDING SITE FOR RESIDUE NAG E 302
08
AC8
SOFTWARE
ASN B:70 , NAG E:302 , MAN E:304 , MAN E:305
BINDING SITE FOR RESIDUE BMA E 303
09
AC9
SOFTWARE
ARG B:8 , GLU B:71 , GLU B:136 , BMA E:303
BINDING SITE FOR RESIDUE MAN E 304
10
BC1
SOFTWARE
NAG E:302 , BMA E:303
BINDING SITE FOR RESIDUE MAN E 305
11
BC2
SOFTWARE
TYR D:55 , GLN D:57 , VAL D:108 , MET D:116 , ILE D:118 , HOH D:415 , SER E:146 , TRP E:147 , VAL E:148 , TYR E:188 , CYS E:190 , CYS E:191 , PRO E:192 , GLU E:193 , TYR E:195
BINDING SITE FOR RESIDUE 0J0 E 306
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d4dbma_ (A:)
1b: SCOP_d4dbmb_ (B:)
1c: SCOP_d4dbmc_ (C:)
1d: SCOP_d4dbmd_ (D:)
1e: SCOP_d4dbme_ (E:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Nicotinic receptor ligand binding domain-like
(58)
Superfamily
:
Nicotinic receptor ligand binding domain-like
(58)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
California sea hare (Aplysia californica) [TaxId: 6500]
(36)
1a
d4dbma_
A:
1b
d4dbmb_
B:
1c
d4dbmc_
C:
1d
d4dbmd_
D:
1e
d4dbme_
E:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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