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4DBG
Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HOIL-1L-UBL COMPLEXED WITH A HOIP-UBA DERIVATIVE
Authors
:
H. Yagi, T. Hiromoto, T. Mizushima, E. Kurimoto, K. Kato
Date
:
15 Jan 12 (Deposition) - 04 Apr 12 (Release) - 16 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.71
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ubiquitin Fold, Ubiquitination, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yagi, K. Ishimoto, T. Hiromoto, H. Fujita, T. Mizushima, Y. Uekusa, M. Yagi-Utsumi, E. Kurimoto, M. Noda, S. Uchiyama, F. Tokunaga, K. Iwai, K. Kato
A Non-Canonical Uba-Ubl Interaction Forms The Linear-Ubiquitin-Chain Assembly Complex
Embo Rep. V. 13 462 2012
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:55-122)
2: UBA (B:564-615)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
HOIL1_HUMAN
55-122
1
A:55-122
2
UBA
PS50030
Ubiquitin-associated domain (UBA) profile.
RNF31_HUMAN
564-615
1
B:564-615
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Exons
(6, 6)
Info
All Exons
Exon 1.9 (B:482-496)
Exon 1.10 (B:497-579)
Exon 1.11a (B:580-627)
Exon 2.3b (A:52-56)
Exon 2.6 (A:56-87)
Exon 2.7c (A:88-133)
View:
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All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
3: Boundary 1.10/1.11a
4: Boundary 1.11a/1.12
5: Boundary 2.2b/2.3b
6: Boundary 2.3b/2.6
7: Boundary 2.6/2.7c
8: Boundary 2.7c/2.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000324103
1c
ENSE00001872297
chr14:
24616739-24617099
361
RNF31_HUMAN
1-64
64
0
-
-
1.2c
ENST00000324103
2c
ENSE00001361365
chr14:
24617185-24617331
147
RNF31_HUMAN
65-113
49
0
-
-
1.3
ENST00000324103
3
ENSE00001032020
chr14:
24617467-24617622
156
RNF31_HUMAN
114-165
52
0
-
-
1.5
ENST00000324103
5
ENSE00001361361
chr14:
24617851-24617910
60
RNF31_HUMAN
166-185
20
0
-
-
1.6
ENST00000324103
6
ENSE00001032013
chr14:
24618010-24618085
76
RNF31_HUMAN
186-211
26
0
-
-
1.7
ENST00000324103
7
ENSE00001032019
chr14:
24618615-24618792
178
RNF31_HUMAN
211-270
60
0
-
-
1.8
ENST00000324103
8
ENSE00001032022
chr14:
24619270-24619657
388
RNF31_HUMAN
270-399
130
0
-
-
1.9
ENST00000324103
9
ENSE00001032016
chr14:
24619807-24620097
291
RNF31_HUMAN
400-496
97
1
B:482-496
15
1.10
ENST00000324103
10
ENSE00000889364
chr14:
24620340-24620588
249
RNF31_HUMAN
497-579
83
1
B:497-579
83
1.11a
ENST00000324103
11a
ENSE00001617333
chr14:
24620694-24620879
186
RNF31_HUMAN
580-641
62
1
B:580-627
48
1.12
ENST00000324103
12
ENSE00001780213
chr14:
24620995-24621201
207
RNF31_HUMAN
642-710
69
0
-
-
1.13
ENST00000324103
13
ENSE00001662886
chr14:
24624366-24624539
174
RNF31_HUMAN
711-768
58
0
-
-
1.14
ENST00000324103
14
ENSE00001793277
chr14:
24624623-24624721
99
RNF31_HUMAN
769-801
33
0
-
-
1.15
ENST00000324103
15
ENSE00001759230
chr14:
24624812-24624901
90
RNF31_HUMAN
802-831
30
0
-
-
1.16a
ENST00000324103
16a
ENSE00001755858
chr14:
24626499-24626613
115
RNF31_HUMAN
832-870
39
0
-
-
1.17
ENST00000324103
17
ENSE00001772571
chr14:
24626729-24626847
119
RNF31_HUMAN
870-909
40
0
-
-
1.18
ENST00000324103
18
ENSE00001787690
chr14:
24627107-24627220
114
RNF31_HUMAN
910-947
38
0
-
-
1.19
ENST00000324103
19
ENSE00001696970
chr14:
24627351-24627408
58
RNF31_HUMAN
948-967
20
0
-
-
1.20
ENST00000324103
20
ENSE00001639274
chr14:
24629073-24629169
97
RNF31_HUMAN
967-999
33
0
-
-
1.21
ENST00000324103
21
ENSE00001686595
chr14:
24629448-24629616
169
RNF31_HUMAN
999-1055
57
0
-
-
1.22b
ENST00000324103
22b
ENSE00001926486
chr14:
24629729-24629866
138
RNF31_HUMAN
1056-1072
17
0
-
-
2.2b
ENST00000356286
2b
ENSE00001491331
chr20:
388697-389423
727
HOIL1_HUMAN
1-8
8
0
-
-
2.3b
ENST00000356286
3b
ENSE00001621542
chr20:
390525-390669
145
HOIL1_HUMAN
8-56
49
1
A:52-56
5
2.6
ENST00000356286
6
ENSE00001604688
chr20:
398170-398263
94
HOIL1_HUMAN
56-87
32
1
A:56-87
32
2.7c
ENST00000356286
7c
ENSE00001665019
chr20:
398376-398574
199
HOIL1_HUMAN
88-154
67
1
A:88-133
46
2.8
ENST00000356286
8
ENSE00001678391
chr20:
399991-400112
122
HOIL1_HUMAN
154-194
41
0
-
-
2.9c
ENST00000356286
9c
ENSE00001609465
chr20:
400202-400375
174
HOIL1_HUMAN
195-252
58
0
-
-
2.10b
ENST00000356286
10b
ENSE00001226965
chr20:
401515-401675
161
HOIL1_HUMAN
253-306
54
0
-
-
2.11b
ENST00000356286
11b
ENSE00001703252
chr20:
402771-402882
112
HOIL1_HUMAN
306-343
38
0
-
-
2.12
ENST00000356286
12
ENSE00001755728
chr20:
407957-408136
180
HOIL1_HUMAN
344-403
60
0
-
-
2.13a
ENST00000356286
13a
ENSE00001802312
chr20:
409135-409233
99
HOIL1_HUMAN
404-436
33
0
-
-
2.13c
ENST00000356286
13c
ENSE00001772865
chr20:
409595-409738
144
HOIL1_HUMAN
437-484
48
0
-
-
2.14b
ENST00000356286
14b
ENSE00001804805
chr20:
410994-411610
617
HOIL1_HUMAN
485-510
26
0
-
-
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