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4D99
Biol. Unit 1
Info
Asym.Unit (215 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (107 KB)
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(1)
Title
:
SALMONELLA TYPHIMURIUM D-CYSTEINE DESULFHYDRASE WITH L-SER BOUND NON-COVALENTLY AT THE ACTIVE SITE
Authors
:
S. R. Bharath, B. Shveta, K. H. Rajesh, H. S. Savithri, M. R. N. Murthy
Date
:
11 Jan 12 (Deposition) - 30 May 12 (Release) - 10 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Fold Type Ii Plp-Dependent Enzyme, Tryptophan Synthase Beta Subunit- Like Plp-Dependent Enzymes Superfamily, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. R. Bharath, S. Bisht, R. K. Harijan, H. S. Savithri, M. R. N. Murthy
Structural And Mutational Studies On Substrate Specificity And Catalysis Of Salmonella Typhimurium D-Cysteine Desulfhydrase.
Plos One V. 7 36267 2012
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
1b: BENZAMIDINE (BENb)
1c: BENZAMIDINE (BENc)
2a: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPa)
2b: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPb)
2c: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPc)
2d: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPd)
3a: SODIUM ION (NAa)
4a: SERINE (SERa)
4b: SERINE (SERb)
4c: SERINE (SERc)
4d: SERINE (SERd)
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No.
Name
Count
Type
Full Name
1
BEN
2
Ligand/Ion
BENZAMIDINE
2
LLP
2
Mod. Amino Acid
(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
3
NA
-1
Ligand/Ion
SODIUM ION
4
SER
2
Mod. Amino Acid
SERINE
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:30 , LEU A:31 , HOH A:687
BINDING SITE FOR RESIDUE BEN A 401
2
AC2
SOFTWARE
LLP A:51 , ALA A:73 , ALA A:75 , SER A:78 , ASN A:79 , HIS A:80 , GLY A:159 , TYR A:261 , TYR A:287
BINDING SITE FOR RESIDUE SER A 402
3
AC3
SOFTWARE
TYR B:30 , LEU B:31 , TYR C:30 , LEU C:31
BINDING SITE FOR RESIDUE BEN B 401
4
AC4
SOFTWARE
LLP B:51 , ALA B:73 , SER B:78 , ASN B:79 , HIS B:80 , VAL B:158 , GLY B:159 , TYR B:261 , TYR B:287
BINDING SITE FOR RESIDUE SER B 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4d99a_ (A:)
1b: SCOP_d4d99b_ (B:)
1c: SCOP_d4d99c_ (C:)
1d: SCOP_d4d99d_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
automated matches
(45)
Protein domain
:
automated matches
(45)
Salmonella typhimurium [TaxId: 90371]
(13)
1a
d4d99a_
A:
1b
d4d99b_
B:
1c
d4d99c_
C:
1d
d4d99d_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (215 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
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