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4D96
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (107 KB)
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(1)
Title
:
D-CYSTEINE DESULFHYDRASE FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH 1-AMINO-1-CARBOXYCYCLOPROPANE (ACC)
Authors
:
S. R. Bharath, B. Shveta, K. H. Rajesh, H. S. Savithri, M. R. N. Murthy
Date
:
11 Jan 12 (Deposition) - 30 May 12 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Fold Type Ii Plp-Dependent Enzyme, Tryptophan Synthase Beta Subunit Like Family, Plp Dependent Enzyme, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. R. Bharath, S. Bisht, R. K. Harijan, H. S. Savithri, M. R. N. Murthy
Structural And Mutational Studies On Substrate Specificity And Catalysis Of Salmonella Typhimurium D-Cysteine Desulfhydrase.
Plos One V. 7 36267 2012
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (5PAa)
1b: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (5PAb)
1c: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (5PAc)
1d: N-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (5PAd)
2a: BENZAMIDINE (BENa)
2b: BENZAMIDINE (BENb)
2c: BENZAMIDINE (BENc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
5PA
4
Ligand/Ion
N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID
2
BEN
3
Ligand/Ion
BENZAMIDINE
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:50 , LYS A:51 , LYS A:54 , SER A:78 , ASN A:79 , HIS A:80 , GLY A:159 , GLY A:194 , SER A:195 , ALA A:196 , GLY A:197 , THR A:198 , TYR A:287 , THR A:315 , GLY A:316 , GLY A:317 , SO4 A:503 , HOH A:609 , HOH A:634 , HOH A:734
BINDING SITE FOR RESIDUE 5PA A 501
2
AC2
SOFTWARE
TYR A:30 , LEU A:31 , ILE A:296 , HOH A:802
BINDING SITE FOR RESIDUE BEN A 502
3
AC3
SOFTWARE
GLY A:194 , SER A:195 , VAL A:220 , SER A:221 , ARG A:222 , TYR A:261 , TYR A:287 , 5PA A:501 , HOH A:620
BINDING SITE FOR RESIDUE SO4 A 503
4
AC4
SOFTWARE
ASN B:50 , LYS B:51 , LYS B:54 , SER B:78 , ASN B:79 , HIS B:80 , GLY B:159 , GLY B:194 , SER B:195 , ALA B:196 , GLY B:197 , THR B:198 , TYR B:287 , THR B:315 , GLY B:316 , GLY B:317 , HOH B:608 , HOH B:640 , HOH B:693
BINDING SITE FOR RESIDUE 5PA B 501
5
AC5
SOFTWARE
LEU B:31 , TYR C:30 , LEU C:31 , SER C:300
BINDING SITE FOR RESIDUE BEN C 401
6
AC6
SOFTWARE
ASN C:50 , LYS C:51 , LYS C:54 , SER C:78 , ASN C:79 , HIS C:80 , GLY C:159 , GLY C:194 , SER C:195 , ALA C:196 , GLY C:197 , THR C:198 , TYR C:287 , THR C:315 , GLY C:316 , GLY C:317 , HOH C:539 , HOH C:564 , HOH C:589
BINDING SITE FOR RESIDUE 5PA C 402
7
AC7
SOFTWARE
ASN D:50 , LYS D:51 , LYS D:54 , SER D:78 , ASN D:79 , HIS D:80 , GLY D:159 , GLY D:194 , SER D:195 , ALA D:196 , GLY D:197 , THR D:198 , TYR D:287 , THR D:315 , GLY D:316 , GLY D:317 , SO4 D:503 , HOH D:611 , HOH D:730 , HOH D:731
BINDING SITE FOR RESIDUE 5PA D 501
8
AC8
SOFTWARE
TYR D:30 , LEU D:31 , ILE D:296
BINDING SITE FOR RESIDUE BEN D 502
9
AC9
SOFTWARE
GLY D:194 , SER D:195 , SER D:221 , ARG D:222 , TYR D:261 , TYR D:287 , 5PA D:501 , HOH D:656
BINDING SITE FOR RESIDUE SO4 D 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4d96a_ (A:)
1b: SCOP_d4d96b_ (B:)
1c: SCOP_d4d96c_ (C:)
1d: SCOP_d4d96d_ (D:)
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Protein Domains
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)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
automated matches
(45)
Protein domain
:
automated matches
(45)
Salmonella typhimurium [TaxId: 90371]
(13)
1a
d4d96a_
A:
1b
d4d96b_
B:
1c
d4d96c_
C:
1d
d4d96d_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (216 KB)
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