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4D8K
Asym. Unit
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Asym.Unit (62 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SH3-SH2 DOMAINS OF A LYMPHOCYTE-SPECIFIC PROTEIN TYROSINE KINASE (LCK) FROM HOMO SAPIENS AT 2.36 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)
Date
:
10 Jan 12 (Deposition) - 25 Jan 12 (Release) - 29 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.36
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein Kinases, Sh2 Domain, Sh3 Domain, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Partnership For T-Cell Biology, Tcell, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology
Crystal Structure Of A Sh3-Sh2 Domains Of A Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From Homo Sapiens At 2. 36 A Resolution
To Be Published
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:154 , SER A:156 , GLU A:157 , SER A:158 , HOH A:406
BINDING SITE FOR RESIDUE SO4 A 301
2
AC2
SOFTWARE
HIS A:70 , ASN A:114 , SER A:213 , ASP A:214
BINDING SITE FOR RESIDUE GOL A 302
3
AC3
SOFTWARE
LYS A:118 , PHE A:170 , ASP A:171 , GLN A:172 , LYS A:179
BINDING SITE FOR RESIDUE GOL A 303
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051697 (G201S, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051697
G
201
S
LCK_HUMAN
Polymorphism
11567841
A
G
201
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:127-224)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
LCK_HUMAN
127-224
1
A:127-224
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Exons
(5, 5)
Info
All Exons
Exon 1.3f (A:64-93)
Exon 1.3h (A:93-126)
Exon 1.4c (A:126-161)
Exon 1.5 (A:161-211)
Exon 1.6b (A:211-226)
View:
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All Exon Boundaries
1: Boundary 1.3a/1.3f
2: Boundary 1.3f/1.3h
3: Boundary 1.3h/1.4c
4: Boundary 1.4c/1.5
5: Boundary 1.5/1.6b
6: Boundary 1.6b/1.7a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000336890
1a
ENSE00001532907
chr1:
32716840-32716972
133
LCK_HUMAN
-
0
0
-
-
1.2h
ENST00000336890
2h
ENSE00002175789
chr1:
32739926-32740035
110
LCK_HUMAN
1-35
35
0
-
-
1.3a
ENST00000336890
3a
ENSE00001301511
chr1:
32740338-32740419
82
LCK_HUMAN
36-63
28
0
-
-
1.3f
ENST00000336890
3f
ENSE00001323374
chr1:
32740594-32740684
91
LCK_HUMAN
63-93
31
1
A:64-93
30
1.3h
ENST00000336890
3h
ENSE00001321874
chr1:
32740922-32741020
99
LCK_HUMAN
93-126
34
1
A:93-126
34
1.4c
ENST00000336890
4c
ENSE00001299684
chr1:
32741170-32741273
104
LCK_HUMAN
126-161
36
1
A:126-161
36
1.5
ENST00000336890
5
ENSE00001330813
chr1:
32741515-32741664
150
LCK_HUMAN
161-211
51
1
A:161-211
51
1.6b
ENST00000336890
6b
ENSE00001307776
chr1:
32741938-32742090
153
LCK_HUMAN
211-262
52
1
A:211-226
16
1.7a
ENST00000336890
7a
ENSE00001327737
chr1:
32742208-32742387
180
LCK_HUMAN
262-322
61
0
-
-
1.8b
ENST00000336890
8b
ENSE00001292351
chr1:
32745272-32745348
77
LCK_HUMAN
322-347
26
0
-
-
1.8e
ENST00000336890
8e
ENSE00001706218
chr1:
32745442-32745595
154
LCK_HUMAN
348-399
52
0
-
-
1.9b
ENST00000336890
9b
ENSE00001805246
chr1:
32745680-32745811
132
LCK_HUMAN
399-443
45
0
-
-
1.10d
ENST00000336890
10d
ENSE00001348148
chr1:
32751115-32751766
652
LCK_HUMAN
443-509
67
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4d8ka1 (A:64-120)
2a: SCOP_d4d8ka2 (A:121-226)
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Class
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All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d4d8ka1
A:64-120
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Human (Homo sapiens) [TaxId: 9606]
(30)
2a
d4d8ka2
A:121-226
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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