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4D8A
Biol. Unit 3
Info
Asym.Unit (178 KB)
Biol.Unit 1 (175 KB)
Biol.Unit 2 (169 KB)
Biol.Unit 3 (341 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B. ANTHRACIS DHPS WITH COMPOUND 21
Authors
:
D. Hammoudeh, R. E. Lee, S. W. White
Date
:
10 Jan 12 (Deposition) - 04 Apr 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.18
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Biol. Unit 3: A,B (2x)
Keywords
:
Tim Barrel, Tim Narrel, Synthase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhao, D. Hammoudeh, M. K. Yun, J. Qi, S. W. White, R. E. Lee
Structure-Based Design Of Novel Pyrimido[4, 5-C]Pyridazine Derivatives As Dihydropteroate Synthase Inhibitors With Increased Affinity.
Chemmedchem V. 7 861 2012
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: METHYL (3R)-3-(7-AMINO-4,5-DIOXO-1... (0HYa)
1b: METHYL (3R)-3-(7-AMINO-4,5-DIOXO-1... (0HYb)
2a: LYSINE (LYSa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0HY
2
Ligand/Ion
METHYL (3R)-3-(7-AMINO-4,5-DIOXO-1,4,5,6-TETRAHYDROPYRIMIDO[4,5-C]PYRIDAZIN-3-YL)BUTANOATE
2
LYS
-1
Mod. Amino Acid
LYSINE
3
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:17 , GLU A:18 , LYS A:19 , THR A:20 , CYS A:250 , ASP A:269 , ILE A:272 , GLY A:273 , HOH A:402 , HOH A:404
BINDING SITE FOR RESIDUE LYS A 301
02
AC2
SOFTWARE
LYS A:50 , ARG A:53
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
SER A:221 , ARG A:234
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
ARG A:219
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
ILE A:25 , ASP A:101 , ASN A:120 , ILE A:122 , ILE A:143 , MET A:145 , ASP A:184 , PHE A:189 , GLY A:216 , LYS A:220 , ARG A:254 , HIS A:256
BINDING SITE FOR RESIDUE 0HY A 305
06
AC6
SOFTWARE
SER B:221 , ARG B:234
BINDING SITE FOR RESIDUE SO4 B 301
07
AC7
SOFTWARE
ARG B:219
BINDING SITE FOR RESIDUE SO4 B 302
08
AC8
SOFTWARE
ARG B:201 , ASN B:202
BINDING SITE FOR RESIDUE SO4 B 303
09
AC9
SOFTWARE
LYS B:50 , ARG B:53
BINDING SITE FOR RESIDUE SO4 B 304
10
BC1
SOFTWARE
LEU B:229 , ARG B:263
BINDING SITE FOR RESIDUE SO4 B 305
11
BC2
SOFTWARE
ASP B:101 , ASN B:120 , ILE B:122 , ILE B:143 , MET B:145 , ASP B:184 , PHE B:189 , GLY B:216 , LYS B:220 , ARG B:254
BINDING SITE FOR RESIDUE 0HY B 306
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4d8aa_ (A:)
1b: SCOP_d4d8ab_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Dihydropteroate synthetase-like
(59)
Family
:
Dihydropteroate synthetase
(40)
Protein domain
:
Dihydropteroate synthetase
(34)
Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
(28)
1a
d4d8aa_
A:
1b
d4d8ab_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Show PDB file:
Asym.Unit (178 KB)
Header - Asym.Unit
Biol.Unit 1 (175 KB)
Header - Biol.Unit 1
Biol.Unit 2 (169 KB)
Header - Biol.Unit 2
Biol.Unit 3 (341 KB)
Header - Biol.Unit 3
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