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4D6U
Asym. Unit
Info
Asym.Unit (656 KB)
Biol.Unit 1 (315 KB)
Biol.Unit 2 (332 KB)
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(1)
Title
:
CYTOCHROME BC1 BOUND TO THE 4(1H)-PYRIDONE GSK932121
Authors
:
M. J. Capper, P. M. O'Neill, N. Fisher, R. W. Strange, D. Moss, S. A. Ward, N. G. Berry, A. S. Lawrenson, S. S. Hasnain, G. A. Biagini, S. V. Antonyu
Date
:
14 Nov 14 (Deposition) - 14 Jan 15 (Release) - 04 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.09
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Biol. Unit 2: N,O,P,Q,R,S,T,U,V,W (1x)
Keywords
:
Oxidoreductase, Membrane Protein, Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Capper, P. M. O'Neill, N. Fisher, R. W. Strange, D. Moss, S. A. Ward N. G. Berry, A. S. Lawrenson, S. S. Hasnain, G. A. Biagini, S. V. Antonyuk
Antimalarial 4(1H)-Pyridones Bind To The Qi Site Of Cytochrome Bc1.
Proc. Natl. Acad. Sci. Usa V. 112 755 2015
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Hetero Components
(8, 27)
Info
All Hetero Components
1a: CARDIOLIPIN (CDLa)
1b: CARDIOLIPIN (CDLb)
1c: CARDIOLIPIN (CDLc)
1d: CARDIOLIPIN (CDLd)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3a: 3-CHLORO-6-(HYDROXYMETHYL)-2-METHY... (G8Ua)
3b: 3-CHLORO-6-(HYDROXYMETHYL)-2-METHY... (G8Ub)
4a: GLYCEROL (GOLa)
5a: HEME C (HECa)
5b: HEME C (HECb)
6a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
6c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
6d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
7a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEa)
7b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEb)
7c: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEc)
7d: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEd)
8a: PHOSPHATE ION (PO4a)
8b: PHOSPHATE ION (PO4b)
8c: PHOSPHATE ION (PO4c)
8d: PHOSPHATE ION (PO4d)
8e: PHOSPHATE ION (PO4e)
8f: PHOSPHATE ION (PO4f)
8g: PHOSPHATE ION (PO4g)
8h: PHOSPHATE ION (PO4h)
8i: PHOSPHATE ION (PO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CDL
4
Ligand/Ion
CARDIOLIPIN
2
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
G8U
2
Ligand/Ion
3-CHLORO-6-(HYDROXYMETHYL)-2-METHYL-5-{4-[3-(TRIFLUOROMETHOXY)PHENOXY]PHENYL}PYRIDIN-4-OL
4
GOL
1
Ligand/Ion
GLYCEROL
5
HEC
2
Ligand/Ion
HEME C
6
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
PEE
4
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
8
PO4
9
Ligand/Ion
PHOSPHATE ION
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN C:44 , ILE C:45 , GLY C:48 , LEU C:49 , LEU C:51 , ALA C:52 , VAL C:66 , ARG C:80 , HIS C:83 , GLY C:130 , LEU C:133 , PRO C:134 , HIS C:182 , PHE C:183 , PRO C:186
BINDING SITE FOR RESIDUE HEM C 501
02
AC2
SOFTWARE
TRP C:31 , GLY C:34 , LEU C:37 , HIS C:97 , ARG C:100 , SER C:106 , TRP C:113 , GLY C:116 , VAL C:117 , LEU C:119 , HIS C:196 , LEU C:200 , SER C:205 , ASN C:206 , G8U C:503
BINDING SITE FOR RESIDUE HEM C 502
03
AC3
SOFTWARE
PHE C:18 , LEU C:21 , TRP C:31 , SER C:35 , ILE C:42 , LEU C:197 , HIS C:201 , SER C:205 , PHE C:220 , ASP C:228 , HEM C:502
BINDING SITE FOR RESIDUE G8U C 503
04
AC4
SOFTWARE
SER A:439 , PHE A:442 , HIS C:221
BINDING SITE FOR RESIDUE PO4 C 504
05
AC5
SOFTWARE
TRP C:30 , TYR C:95 , ARG C:100 , TYR C:103 , TYR C:104 , PHE C:276 , MET C:316 , TRP C:326 , VAL C:329 , LEU C:332 , TYR C:358 , CDL G:501
BINDING SITE FOR RESIDUE PEE C 505
06
AC6
SOFTWARE
VAL D:36 , CYS D:37 , CYS D:40 , HIS D:41 , ALA D:108 , PRO D:110 , ILE D:116 , ARG D:120 , TYR D:126 , PHE D:153 , ILE D:158 , GLY D:159 , MET D:160 , PRO D:163
BINDING SITE FOR RESIDUE HEC D 501
07
AC7
SOFTWARE
PO4 D:504
BINDING SITE FOR RESIDUE PO4 D 502
08
AC8
SOFTWARE
PO4 D:502 , SER E:56
BINDING SITE FOR RESIDUE PO4 D 504
09
AC9
SOFTWARE
SER C:29 , ASN C:32 , LEU C:36 , LYS C:227 , LEU C:230 , LEU C:234 , LEU D:216 , TYR D:220 , LYS D:223 , ARG D:224 , LYS D:231 , ASN G:36 , ARG G:40 , CDL G:501
BINDING SITE FOR RESIDUE CDL D 505
10
BC1
SOFTWARE
MET C:240 , HIS D:200 , MET D:204 , LYS D:207 , TYR E:49 , ALA E:50 , ASN E:53 , VAL E:54
BINDING SITE FOR RESIDUE PEE D 506
11
BC2
SOFTWARE
PHE A:442 , TYR E:37 , THR E:40
BINDING SITE FOR RESIDUE PO4 E 501
12
BC3
SOFTWARE
ARG F:49 , TYR F:93 , ARG O:134 , TRP O:135
BINDING SITE FOR RESIDUE PO4 F 501
13
BC4
SOFTWARE
SER C:29 , TRP C:30 , PEE C:505 , CDL D:505 , GLN F:72 , ARG G:40 , THR G:41 , CYS G:44
BINDING SITE FOR RESIDUE CDL G 501
14
BC5
SOFTWARE
PHE N:442 , TYR R:37 , THR R:40
BINDING SITE FOR RESIDUE PO4 N 501
15
BC6
SOFTWARE
GLN P:44 , ILE P:45 , GLY P:48 , LEU P:49 , ALA P:52 , VAL P:66 , ARG P:80 , HIS P:83 , ALA P:84 , ALA P:127 , GLY P:130 , LEU P:133 , PRO P:134 , HIS P:182 , PHE P:183 , PRO P:186
BINDING SITE FOR RESIDUE HEM P 501
16
BC7
SOFTWARE
TRP P:31 , GLY P:34 , LEU P:37 , PHE P:90 , LEU P:94 , HIS P:97 , ARG P:100 , SER P:106 , PHE P:109 , TRP P:113 , GLY P:116 , VAL P:117 , LEU P:119 , LEU P:120 , HIS P:196 , LEU P:200 , SER P:205 , ASN P:206
BINDING SITE FOR RESIDUE HEM P 502
17
BC8
SOFTWARE
ALA P:17 , PHE P:18 , LEU P:21 , SER P:35 , ILE P:42 , ALA P:193 , MET P:194 , LEU P:197 , HIS P:201 , SER P:205 , PHE P:220 , ASP P:228
BINDING SITE FOR RESIDUE G8U P 503
18
BC9
SOFTWARE
SER N:439 , PHE N:442 , HIS P:221
BINDING SITE FOR RESIDUE PO4 P 504
19
CC1
SOFTWARE
TRP P:30 , TYR P:95 , TYR P:103 , TYR P:104 , PHE P:276 , MET P:316 , GLN P:322 , TRP P:326 , VAL P:329 , LEU P:332 , SER S:69 , GLN S:72 , CDL T:501
BINDING SITE FOR RESIDUE PEE P 505
20
CC2
SOFTWARE
VAL Q:36 , CYS Q:37 , CYS Q:40 , HIS Q:41 , LEU Q:109 , PRO Q:111 , ARG Q:120 , TYR Q:126 , LEU Q:131 , PHE Q:153 , GLY Q:159 , MET Q:160
BINDING SITE FOR RESIDUE HEC Q 501
21
CC3
SOFTWARE
SER P:29 , LEU P:36 , LYS P:227 , TYR Q:220 , LYS Q:223 , ARG Q:224 , LYS Q:231 , MET S:70 , ARG S:71 , ASN T:36 , ARG T:40 , CDL T:501
BINDING SITE FOR RESIDUE CDL Q 505
22
CC4
SOFTWARE
ILE P:229 , ILE P:236 , HIS Q:200 , MET Q:204 , LYS Q:207 , MET Q:212 , TYR R:49 , ALA R:50 , ASN R:53 , VAL R:54 , GLN R:57 , ASP W:36
BINDING SITE FOR RESIDUE PEE Q 506
23
CC5
SOFTWARE
CYS R:139 , HIS R:141 , LEU R:142 , CYS R:144 , CYS R:158 , HIS R:161 , SER R:163 , PRO R:175
BINDING SITE FOR RESIDUE FES R 501
24
CC6
SOFTWARE
PHE C:168 , LYS R:94 , ILE R:136
BINDING SITE FOR RESIDUE GOL R 502
25
CC7
SOFTWARE
ARG B:134 , PRO S:51 , TYR S:93
BINDING SITE FOR RESIDUE PO4 S 501
26
CC8
SOFTWARE
SER P:28 , SER P:29 , TRP P:30 , ILE P:92 , MET P:96 , PEE P:505 , CDL Q:505 , GLN S:72 , ARG T:40 , THR T:41
BINDING SITE FOR RESIDUE CDL T 501
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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