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4D6T
Biol. Unit 1
Info
Asym.Unit (657 KB)
Biol.Unit 1 (315 KB)
Biol.Unit 2 (333 KB)
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(1)
Title
:
CYTOCHROME BC1 BOUND TO THE 4(1H)-PYRIDONE GW844520
Authors
:
M. J. Capper, P. M. O'Neill, N. Fisher, R. W. Strange, D. Moss, S. A. Ward, N. G. Berry, A. S. Lawrenson, S. S. Hasnain, G. A. Biagini, S. V. Antonyu
Date
:
14 Nov 14 (Deposition) - 14 Jan 15 (Release) - 04 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.57
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Biol. Unit 2: N,O,P,Q,R,S,T,U,V,W (1x)
Keywords
:
Electron Transport, Cytochrome Bc1, Pyridone, Membrane Protein, Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Capper, P. M. O'Neill, N. Fisher, R. W. Strange, D. Moss, S. A. Ward N. G. Berry, A. S. Lawrenson, S. S. Hasnain, G. A. Biagini, S. V. Antonyuk
Antimalarial 4(1H)-Pyridones Bind To The Qi Site Of Cytochrome Bc1.
Proc. Natl. Acad. Sci. Usa V. 112 755 2015
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Hetero Components
(6, 14)
Info
All Hetero Components
1a: 3-CHLORO-2,6-DIMETHYL-5-{4-[4-(TRI... (4X9a)
1b: 3-CHLORO-2,6-DIMETHYL-5-{4-[4-(TRI... (4X9b)
2a: CARDIOLIPIN (CDLa)
2b: CARDIOLIPIN (CDLb)
2c: CARDIOLIPIN (CDLc)
2d: CARDIOLIPIN (CDLd)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
4a: GLYCEROL (GOLa)
5a: HEME C (HECa)
5b: HEME C (HECb)
6a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
6c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
6d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
7a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEa)
7b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEb)
7c: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEc)
7d: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEd)
8a: PHOSPHATE ION (PO4a)
8b: PHOSPHATE ION (PO4b)
8c: PHOSPHATE ION (PO4c)
8d: PHOSPHATE ION (PO4d)
8e: PHOSPHATE ION (PO4e)
8f: PHOSPHATE ION (PO4f)
8g: PHOSPHATE ION (PO4g)
8h: PHOSPHATE ION (PO4h)
8i: PHOSPHATE ION (PO4i)
8j: PHOSPHATE ION (PO4j)
8k: PHOSPHATE ION (PO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4X9
1
Ligand/Ion
3-CHLORO-2,6-DIMETHYL-5-{4-[4-(TRIFLUOROMETHOXY)PHENOXY]PHENYL}PYRIDIN-4-OL
2
CDL
2
Ligand/Ion
CARDIOLIPIN
3
FES
-1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
GOL
-1
Ligand/Ion
GLYCEROL
5
HEC
1
Ligand/Ion
HEME C
6
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
PEE
2
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
8
PO4
6
Ligand/Ion
PHOSPHATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU C:41 , GLN C:44 , ILE C:45 , GLY C:48 , LEU C:49 , LEU C:51 , ARG C:80 , HIS C:83 , ALA C:87 , THR C:126 , GLY C:130 , TYR C:131 , PRO C:134 , HIS C:182 , PHE C:183 , PRO C:186
BINDING SITE FOR RESIDUE HEM C 501
02
AC2
SOFTWARE
TRP C:31 , GLY C:34 , LEU C:37 , HIS C:97 , ARG C:100 , SER C:106 , TRP C:113 , GLY C:116 , HIS C:196 , LEU C:200 , SER C:205 , ASN C:206 , 4X9 C:503
BINDING SITE FOR RESIDUE HEM C 502
03
AC3
SOFTWARE
PHE C:18 , ILE C:27 , SER C:35 , GLY C:38 , ILE C:42 , MET C:190 , MET C:194 , HIS C:201 , SER C:205 , PHE C:220 , ASP C:228 , HEM C:502
BINDING SITE FOR RESIDUE 4X9 C 503
04
AC4
SOFTWARE
SER A:439 , HIS C:221
BINDING SITE FOR RESIDUE PO4 C 504
05
AC5
SOFTWARE
TRP C:30 , TYR C:95 , ARG C:100 , TYR C:103 , TYR C:104 , MET C:316 , TRP C:326 , VAL C:329 , LEU C:332 , CDL G:501
BINDING SITE FOR RESIDUE PEE C 505
06
AC6
SOFTWARE
VAL D:36 , CYS D:37 , CYS D:40 , HIS D:41 , ASN D:105 , PRO D:110 , PRO D:111 , ARG D:120 , TYR D:126 , PHE D:153 , ILE D:158 , GLY D:159 , MET D:160 , PRO D:163
BINDING SITE FOR RESIDUE HEC D 501
07
AC7
SOFTWARE
PO4 D:504 , SER E:60
BINDING SITE FOR RESIDUE PO4 D 502
08
AC8
SOFTWARE
ARG D:15
BINDING SITE FOR RESIDUE PO4 D 503
09
AC9
SOFTWARE
TYR C:75 , PO4 D:502 , SER E:56 , GLN E:57
BINDING SITE FOR RESIDUE PO4 D 504
10
BC1
SOFTWARE
SER C:29 , ASN C:32 , LYS C:227 , LEU C:230 , LEU C:234 , TYR D:220 , LYS D:223 , ARG D:224 , LYS D:231 , ARG F:71 , ASN G:36 , CDL G:501
BINDING SITE FOR RESIDUE CDL D 505
11
BC2
SOFTWARE
HIS D:200 , ARG D:203 , MET D:204 , LYS D:207 , ASN E:53 , VAL E:54 , GLN E:57
BINDING SITE FOR RESIDUE PEE D 506
12
BC3
SOFTWARE
PHE A:442 , TYR E:37 , THR E:40 , PHE J:20
BINDING SITE FOR RESIDUE PO4 E 501
13
BC4
SOFTWARE
ARG F:49 , TYR F:93 , ARG O:134 , TRP O:135
BINDING SITE FOR RESIDUE PO4 F 501
14
BC5
SOFTWARE
SER C:29 , TRP C:30 , PEE C:505 , CDL D:505 , GLN F:72 , ARG G:40 , THR G:41 , CYS G:44
BINDING SITE FOR RESIDUE CDL G 501
15
CC9
SOFTWARE
PHE C:168 , ARG R:92 , LYS R:94 , ILE R:136
BINDING SITE FOR RESIDUE GOL R 502
16
DC1
SOFTWARE
ARG B:134 , TYR S:93
BINDING SITE FOR RESIDUE PO4 S 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain H
Chain I
Chain J
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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wireframe 100
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Asym.Unit (657 KB)
Header - Asym.Unit
Biol.Unit 1 (315 KB)
Header - Biol.Unit 1
Biol.Unit 2 (333 KB)
Header - Biol.Unit 2
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