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4D6Q
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (268 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN JMJD2D IN COMPLEX WITH 2,4-PDCA
Authors
:
T. Krojer, M. Vollmar, A. Bradley, L. Crawley, A. Szykowska, N. Burgess C. Gileadi, C. Johansson, U. Oppermann, C. Bountra, C. H. Arrowsmith, A. Edwards, F. Von Delft
Date
:
14 Nov 14 (Deposition) - 24 Dec 14 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.29
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transcription, Kdm4D, Flj10251, Mgc141909, Demethylase/2Og, Jumonji Domain Containing 2D
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
T. Krojer, M. Vollmar, A. Bradley, L. Crawley, A. Szykowska, N. Burgess-Brown, C. Gileadi, C. Johansson, U. Oppermann, C. Bountra C. H. Arrowsmith, A. Edwards, F. Von Delft
Crystal Structure Of Human Jmjd2D In Complex With 2, 4-Pdca
To Be Published
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
2a: NICKEL (II) ION (NIa)
3a: PYRIDINE-2,4-DICARBOXYLIC ACID (PD2a)
4a: SULFATE ION (SO4a)
5a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
2
NI
1
Ligand/Ion
NICKEL (II) ION
3
PD2
1
Ligand/Ion
PYRIDINE-2,4-DICARBOXYLIC ACID
4
SO4
1
Ligand/Ion
SULFATE ION
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:238 , HIS A:244 , CYS A:310 , CYS A:312
BINDING SITE FOR RESIDUE ZN A1341
2
AC2
SOFTWARE
HIS A:192 , GLU A:194 , HIS A:280 , PD2 A:1343 , HOH A:2287
BINDING SITE FOR RESIDUE NI A1342
3
AC3
SOFTWARE
TYR A:136 , PHE A:189 , HIS A:192 , GLU A:194 , LYS A:210 , LYS A:245 , HIS A:280 , NI A:1342 , EDO A:1348 , HOH A:2234 , HOH A:2286 , HOH A:2287 , HOH A:2293
BINDING SITE FOR RESIDUE PD2 A1343
4
AC4
SOFTWARE
LYS A:150 , GLN A:151 , TRP A:152 , ASN A:153 , HIS A:156 , HOH A:2054 , HOH A:2055
BINDING SITE FOR RESIDUE EDO A1344
5
AC5
SOFTWARE
PRO A:251 , THR A:252 , LYS A:255 , ARG A:263 , HOH A:2405
BINDING SITE FOR RESIDUE EDO A1345
6
AC6
SOFTWARE
PHE A:118 , GLU A:122 , ARG A:263 , ILE A:264 , THR A:265 , HOH A:2406
BINDING SITE FOR RESIDUE EDO A1346
7
AC7
SOFTWARE
LYS A:124 , LYS A:127 , ASN A:128
BINDING SITE FOR RESIDUE EDO A1347
8
AC8
SOFTWARE
TYR A:179 , TYR A:181 , GLU A:194 , ALA A:292 , PD2 A:1343 , HOH A:2287 , HOH A:2293 , HOH A:2370
BINDING SITE FOR RESIDUE EDO A1348
9
AC9
SOFTWARE
ARG A:60 , GLU A:61 , THR A:62 , HOH A:2120 , HOH A:2123 , HOH A:2264
BINDING SITE FOR RESIDUE SO4 A1349
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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