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4D5G
Asym. Unit
Info
Asym.Unit (211 KB)
Biol.Unit 1 (397 KB)
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(1)
Title
:
STRUCTURE OF RECOMBINANT CDH-H28AN484A
Authors
:
S. Loschonsky, T. Wacker, S. Waltzer, P. P. Giovannini, M. J. Mcleish, S. L. A. Andrade, M. Mueller
Date
:
04 Nov 14 (Deposition) - 21 Jan 15 (Release) - 06 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Hydrolase, Cdh, C-C Bond Formation, C-C Bond Cleavage
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Loschonsky, T. Wacker, S. Waltzer, P. P. Giovannini, M. J. Mcleish, S. L. A. Andrade, M. Muller
Extended Reaction Scope Of Thiamine Diphosphate Dependent Cyclohexane-1, 2-Dione Hydrolase: From C-C Bond Cleavage To C-C Bond Ligation.
Angew. Chem. Int. Ed. Engl. V. 53 14402 2014
[
close entry info
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Hetero Components
(7, 22)
Info
All Hetero Components
1a: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGa)
2a: NONAETHYLENE GLYCOL (2PEa)
2b: NONAETHYLENE GLYCOL (2PEb)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
6a: TETRAETHYLENE GLYCOL (PG4a)
6b: TETRAETHYLENE GLYCOL (PG4b)
6c: TETRAETHYLENE GLYCOL (PG4c)
6d: TETRAETHYLENE GLYCOL (PG4d)
6e: TETRAETHYLENE GLYCOL (PG4e)
6f: TETRAETHYLENE GLYCOL (PG4f)
6g: TETRAETHYLENE GLYCOL (PG4g)
6h: TETRAETHYLENE GLYCOL (PG4h)
6i: TETRAETHYLENE GLYCOL (PG4i)
7a: THIAMINE DIPHOSPHATE (TPPa)
7b: THIAMINE DIPHOSPHATE (TPPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PG
1
Ligand/Ion
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2
2PE
2
Ligand/Ion
NONAETHYLENE GLYCOL
3
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
MG
3
Ligand/Ion
MAGNESIUM ION
5
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
9
Ligand/Ion
TETRAETHYLENE GLYCOL
7
TPP
2
Ligand/Ion
THIAMINE DIPHOSPHATE
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:153 , GLY A:213 , GLY A:214 , GLY A:215 , ARG A:218 , SER A:219 , THR A:239 , SER A:240 , THR A:241 , ALA A:257 , GLY A:258 , PHE A:259 , CYS A:260 , GLY A:261 , GLY A:279 , SER A:280 , ARG A:281 , LEU A:282 , SER A:283 , TRP A:285 , GLY A:286 , ASP A:302 , THR A:303 , ASP A:304 , ALA A:320 , ASP A:321 , ALA A:322 , SER A:420 , MET A:421 , ALA A:422 , GLY A:424 , HOH A:2062 , HOH A:2115 , HOH A:2199 , HOH A:2200 , HOH A:2201 , HOH A:2214 , HOH A:2268
BINDING SITE FOR RESIDUE FAD A1588
02
AC2
SOFTWARE
ILE A:398 , GLY A:399 , ASN A:400 , HIS A:401 , GLY A:424 , LEU A:426 , GLY A:450 , ASP A:451 , GLY A:452 , ALA A:453 , TYR A:456 , ASN A:478 , SER A:480 , TYR A:481 , GLY A:482 , ALA A:483 , ASN A:484 , MG A:1590 , HOH A:2279 , HOH A:2294 , HOH A:2356 , ILE B:26 , GLU B:52 , HIS B:76 , VAL B:78
BINDING SITE FOR RESIDUE TPP A1589
03
AC3
SOFTWARE
ASP A:451 , ASN A:478 , SER A:480 , TPP A:1589 , HOH A:2279
BINDING SITE FOR RESIDUE MG A1590
04
AC4
SOFTWARE
PRO A:441 , ARG A:444 , PRO A:470 , SER A:546 , GLN A:549 , ASP A:554 , PG4 A:1594 , HOH A:2244 , HOH A:2278
BINDING SITE FOR RESIDUE PG4 A1591
05
AC5
SOFTWARE
SER A:369 , GLY A:513 , ALA A:514 , LYS A:537
BINDING SITE FOR RESIDUE 1PG A1592
06
AC6
SOFTWARE
GLU A:368 , ARG A:379 , ALA A:382 , ARG A:385 , LYS A:386
BINDING SITE FOR RESIDUE PG4 A1593
07
AC7
SOFTWARE
GLN A:367 , ILE A:533 , ASP A:534 , GLY A:536 , PG4 A:1591
BINDING SITE FOR RESIDUE PG4 A1594
08
AC8
SOFTWARE
GLU A:134 , ARG A:135 , HOH A:2125 , GLU B:134 , ARG B:135 , HOH B:2056 , HOH B:2068 , HOH B:2225
BINDING SITE FOR RESIDUE PG4 A1595
09
AC9
SOFTWARE
ARG A:91 , THR A:124 , PRO A:125 , ALA A:127 , ARG A:128
BINDING SITE FOR RESIDUE PEG A1596
10
BC1
SOFTWARE
LYS A:66 , ARG A:218 , GLY A:220 , GLN A:494 , HOH A:2158
BINDING SITE FOR RESIDUE PEG A1597
11
BC2
SOFTWARE
GLU A:15 , HIS A:41 , GLU A:499 , MG A:1600 , HOH A:2359 , GLU B:466
BINDING SITE FOR RESIDUE PG4 A1598
12
BC3
SOFTWARE
GLN A:117 , VAL A:118 , TRP A:120 , ARG A:132 , HOH A:2071 , HOH B:2051
BINDING SITE FOR RESIDUE PG4 A1599
13
BC4
SOFTWARE
PG4 A:1598 , HOH A:2009 , HOH A:2359
BINDING SITE FOR RESIDUE MG A1600
14
BC5
SOFTWARE
HIS B:153 , GLY B:213 , GLY B:214 , GLY B:215 , ARG B:218 , SER B:219 , THR B:239 , SER B:240 , THR B:241 , ALA B:257 , GLY B:258 , PHE B:259 , CYS B:260 , GLY B:261 , GLY B:279 , SER B:280 , ARG B:281 , LEU B:282 , SER B:283 , TRP B:285 , GLY B:286 , ASP B:302 , THR B:303 , ASP B:304 , ALA B:320 , ASP B:321 , ALA B:322 , SER B:420 , MET B:421 , ALA B:422 , GLY B:424 , HOH B:2033 , HOH B:2063 , HOH B:2117 , HOH B:2118 , HOH B:2119 , HOH B:2129 , HOH B:2169
BINDING SITE FOR RESIDUE FAD B1589
15
BC6
SOFTWARE
ILE A:26 , GLY A:27 , GLU A:52 , HIS A:76 , VAL A:78 , GLN A:116 , ILE B:398 , GLY B:399 , ASN B:400 , HIS B:401 , GLY B:424 , LEU B:426 , GLY B:450 , ASP B:451 , GLY B:452 , ALA B:453 , TYR B:456 , ASN B:478 , SER B:480 , TYR B:481 , GLY B:482 , ALA B:483 , ASN B:484 , MG B:1591 , HOH B:2179 , HOH B:2185
BINDING SITE FOR RESIDUE TPP B1590
16
BC7
SOFTWARE
ASP B:451 , ASN B:478 , SER B:480 , TPP B:1590 , HOH B:2179
BINDING SITE FOR RESIDUE MG B1591
17
BC8
SOFTWARE
VAL B:387 , ARG B:389 , PRO B:441 , ASN B:442 , SER B:443 , ARG B:444 , PRO B:470 , HOH B:2236
BINDING SITE FOR RESIDUE 2PE B1592
18
BC9
SOFTWARE
GLU B:151 , HIS B:153 , ALA B:184 , LYS B:185 , LEU B:188 , THR B:303 , PRO B:305 , PG4 B:1594 , HOH B:2237
BINDING SITE FOR RESIDUE 2PE B1593
19
CC1
SOFTWARE
ARG B:148 , ARG B:183 , ALA B:184 , LEU B:308 , 2PE B:1593 , HOH B:2074
BINDING SITE FOR RESIDUE PG4 B1594
20
CC2
SOFTWARE
ARG B:91 , THR B:124 , ALA B:127 , ARG B:128
BINDING SITE FOR RESIDUE PG4 B1595
21
CC3
SOFTWARE
GLN B:549
BINDING SITE FOR RESIDUE PEG B1596
22
CC4
SOFTWARE
ARG A:132 , GLU A:134 , HOH A:2096 , HOH A:2101 , ALA B:109 , VAL B:118 , TRP B:120 , ARG B:132 , HOH B:2040
BINDING SITE FOR RESIDUE PG4 B1597
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
[
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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