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4D4U
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH LEWISY TETRASACCHARIDE.
Authors
:
J. Houser, J. Komarek, N. Kostlanova, M. Lahmann, G. Cioci, A. Varrot, A M. Wimmerova
Date
:
31 Oct 14 (Deposition) - 11 Mar 15 (Release) - 25 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Houser, J. Komarek, G. Cioci, A. Varrot, A. Imberty, M. Wimmerova
Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites Are Functionally Non- Equivalent.
Acta Crystallogr. , Sect. D V. 71 442 2015
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Hetero Components
(6, 32)
Info
All Hetero Components
1a: S-OXY CYSTEINE (CSXa)
1b: S-OXY CYSTEINE (CSXb)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
2g: ALPHA-L-FUCOSE (FUCg)
2h: ALPHA-L-FUCOSE (FUCh)
2i: ALPHA-L-FUCOSE (FUCi)
2j: ALPHA-L-FUCOSE (FUCj)
2k: ALPHA-L-FUCOSE (FUCk)
2l: ALPHA-L-FUCOSE (FUCl)
2m: ALPHA-L-FUCOSE (FUCm)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
3d: BETA-D-GALACTOSE (GALd)
3e: BETA-D-GALACTOSE (GALe)
3f: BETA-D-GALACTOSE (GALf)
3g: BETA-D-GALACTOSE (GALg)
3h: BETA-D-GALACTOSE (GALh)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
6c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSX
2
Mod. Amino Acid
S-OXY CYSTEINE
2
FUC
13
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
8
Ligand/Ion
BETA-D-GALACTOSE
4
GOL
2
Ligand/Ion
GLYCEROL
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
3
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR B:168 , ARG B:177 , GLN B:189 , MET B:229
BINDING SITE FOR RESIDUE GOL A 940
02
AC2
SOFTWARE
TYR A:168 , ARG A:177 , GLN A:189 , MET A:229 , TRP A:245 , HOH A:2226
BINDING SITE FOR RESIDUE GOL A 941
03
AC3
SOFTWARE
ARG A:230 , GLN A:242 , PHE A:274 , PRO A:279 , LEU A:281 , TRP A:299
BINDING SITE FOR RESIDUE FUC A 950
04
AC4
SOFTWARE
ARG B:230 , GLN B:242 , PHE B:274 , PRO B:279 , LEU B:281 , TRP B:299
BINDING SITE FOR RESIDUE FUC B 950
05
AC5
SOFTWARE
HIS A:23 , ARG A:25 , GLU A:37 , LEU A:69 , TYR A:88 , TRP A:94 , HOH A:2033 , HOH A:2223
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 910 THROUGH NAG A 912
06
AC6
SOFTWARE
HIS A:23 , ARG A:73 , GLU A:85 , TYR A:88 , THR A:92 , TYR A:95 , GLY A:97 , GLY A:98 , LEU A:123 , LEU A:125 , TRP A:141 , TRP A:146 , FUC A:910 , HOH A:2033 , HOH A:2087 , HOH A:2120 , HOH A:2223
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 920 THROUGH NAG A 922
07
AC7
SOFTWARE
THR A:92 , LEU A:123 , GLN A:124 , ARG A:126 , GLU A:138 , TRP A:141 , ASN A:142 , THR A:150 , PRO A:174 , TYR A:192 , TRP A:198 , FUC A:920 , HOH A:2087 , HOH A:2120 , HOH A:2224 , ASN B:172
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 930 THROUGH FUC A 933
08
AC8
SOFTWARE
ASN A:22 , LEU A:24 , TYR A:40 , TRP A:44 , GLN A:124 , ARG A:126 , ASN A:142 , PRO A:174 , TYR A:192 , ASP A:280 , ARG A:282 , GLU A:296 , ASN A:300 , HIS A:303 , FUC A:930 , HOH A:2032 , HOH A:2041 , HOH A:2042 , HOH A:2078 , HOH A:2080 , HOH A:2227 , HOH A:2228 , ASN B:172
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 960 THROUGH FUC A 963
09
AC9
SOFTWARE
ASN A:22 , HIS A:23 , ARG A:25 , GLU A:37 , TYR A:40 , LEU A:69 , TYR A:88 , TRP A:94 , ASP A:280 , ARG A:282 , ASN A:300 , HIS A:303 , FUC A:960 , HOH A:2032 , HOH A:2033 , HOH A:2041 , HOH A:2042 , HOH A:2078 , HOH A:2080 , HOH A:2223 , ARG B:25 , GLU B:37 , TYR B:40 , GLU B:41 , LEU B:69 , TYR B:88 , TRP B:94 , ARG B:190 , PRO B:200 , ASP B:207 , FUC B:960 , HOH B:2068
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 910 THROUGH NAG B 912
10
BC1
SOFTWARE
GLU B:41 , ARG B:73 , GLU B:85 , TYR B:95 , GLY B:98 , LEU B:125 , TRP B:141 , TRP B:146 , ASP B:207 , SER B:305 , GLN B:306 , FUC B:910 , HOH B:2068 , HOH B:2173
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 920 THROUGH NAG B 922
11
BC2
SOFTWARE
GLN B:124 , ARG B:126 , GLU B:138 , TRP B:141 , ASN B:142 , THR B:150 , PRO B:174 , TYR B:192 , TRP B:198 , SER B:305 , GLN B:306 , FUC B:920 , HOH B:2173 , HOH B:2183 , HOH B:2184
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 930 THROUGH FUC B 933
12
BC3
SOFTWARE
LEU B:24 , TYR B:40 , TRP B:44 , GLN B:124 , ARG B:126 , ASN B:142 , PRO B:174 , ARG B:190 , TYR B:192 , PRO B:200 , ARG B:282 , GLU B:296 , FUC B:930 , HOH B:2174 , HOH B:2184
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 960 THROUGH GAL B 961
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (123 KB)
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