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4D2E
Asym. Unit
Info
Asym.Unit (225 KB)
Biol.Unit 1 (213 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN INTEGRAL MEMBRANE KINASE - V2.3
Authors
:
D. Li, C. Boland, M. Caffrey
Date
:
09 May 14 (Deposition) - 23 Jul 14 (Release) - 26 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Transferase, Dgka, In Meso Crystallization, In Vitro Expression, Lipid Metabolism, Lipidic Mesophase, Lipidic Cubic Phase, Lcp, Membrane Protein, Microcrystal, 7. 8 Mag, Thermostable Mutant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Boland, D. Li, S. T. A. Shah, S. Haberstock, V. Dotsch, F. Bernhard, M. Caffrey
Cell-Free Expression And In Meso Crystallisation Of An Integral Membrane Kinase For Structure Determination.
Cell. Mol. Life Sci. V. 71 4895 2014
[
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Ma)
1b: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mb)
1c: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mc)
1d: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Md)
1e: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Me)
1f: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mf)
1g: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mg)
2a: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Na)
2b: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Nb)
2c: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Nc)
2d: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Nd)
2e: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Ne)
2f: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Nf)
2g: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Ng)
2h: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Nh)
2i: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Ni)
2j: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Nj)
2k: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Nk)
3a: CITRATE ANION (FLCa)
3b: CITRATE ANION (FLCb)
4a: SODIUM ION (NAa)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
78M
7
Ligand/Ion
(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
2
78N
11
Ligand/Ion
(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
3
FLC
2
Ligand/Ion
CITRATE ANION
4
NA
1
Ligand/Ion
SODIUM ION
5
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP D:107 , HOH D:2016 , HOH D:2017 , HOH D:2032
BINDING SITE FOR RESIDUE NA D1122
02
AC2
SOFTWARE
GLU D:28 , GLU D:76 , FLC D:1124 , ZN D:1126
BINDING SITE FOR RESIDUE FLC D1123
03
AC3
SOFTWARE
ASP B:49 , GLU D:28 , ALA D:30 , GLU D:69 , GLU D:76 , FLC D:1123 , ZN D:1126 , 78N D:1128 , HOH D:2009
BINDING SITE FOR RESIDUE FLC D1124
04
AC4
SOFTWARE
TRP A:25 , ILE A:26 , MET A:63 , 78M A:1123 , 78M A:1124 , HOH A:2008 , 78N C:1126
BINDING SITE FOR RESIDUE 78M A1122
05
AC5
SOFTWARE
78M A:1122 , HOH A:2003 , TRP C:47 , 78M C:1123 , 78N C:1126
BINDING SITE FOR RESIDUE 78M A1123
06
AC6
SOFTWARE
GLY B:35 , VAL B:36 , TRP D:47 , LEU D:48 , ASP D:49 , PHE D:120
BINDING SITE FOR RESIDUE 78M D1125
07
AC7
SOFTWARE
ALA A:46 , ARG A:55 , 78M A:1122 , ILE B:110 , ILE B:114 , 78N B:1121 , 78N B:1123
BINDING SITE FOR RESIDUE 78M A1124
08
AC8
SOFTWARE
LEU A:48 , GLY A:121 , LEU C:102 , ILE C:105 , 78M C:1123 , 78N C:1124 , 78N C:1125
BINDING SITE FOR RESIDUE 78M A1125
09
AC9
SOFTWARE
TRP A:47 , GLU C:34 , VAL C:65 , GLU C:69 , ALA C:108 , TRP C:112 , 78M C:1123 , 78N C:1126
BINDING SITE FOR RESIDUE 78M C1122
10
BC1
SOFTWARE
VAL A:43 , TRP A:47 , LEU A:48 , 78M A:1123 , 78M A:1125 , LEU C:40 , ILE C:44 , 78M C:1122 , 78N C:1126
BINDING SITE FOR RESIDUE 78M C1123
11
BC2
SOFTWARE
GLU D:28 , GLU D:76 , FLC D:1123 , FLC D:1124
BINDING SITE FOR RESIDUE ZN D1126
12
BC3
SOFTWARE
GLN A:33 , VAL A:62 , 78M A:1125 , TRP C:117 , 78N C:1125 , TRP D:25 , ARG D:32 , VAL D:36
BINDING SITE FOR RESIDUE 78N C1124
13
BC4
SOFTWARE
78M A:1125 , ALA B:46 , ALA B:52 , ARG B:55 , ILE C:114 , TRP C:117 , SER C:118 , 78N C:1124 , GLN D:33 , VAL D:36 , LEU D:39 , LEU D:40
BINDING SITE FOR RESIDUE 78N C1125
14
BC5
SOFTWARE
ALA A:30 , PHE A:31 , GLU A:34 , GLU A:69 , VAL A:101 , LEU A:102 , ILE A:105 , 78N A:1126 , ARG D:22 , TRP D:25 , ILE D:26 , MET D:66
BINDING SITE FOR RESIDUE 78N D1127
15
BC6
SOFTWARE
TRP B:47 , ASP B:49 , HOH B:2002 , ALA D:30 , GLN D:33 , GLU D:34 , LEU D:102 , ILE D:105 , VAL D:109 , FLC D:1124 , HOH D:2018
BINDING SITE FOR RESIDUE 78N D1128
16
BC7
SOFTWARE
ILE A:10 , ALA A:13 , ALA A:14 , SER A:17 , 78M A:1124 , SER B:98 , VAL B:101 , LEU B:102 , 78N B:1123
BINDING SITE FOR RESIDUE 78N B1121
17
BC8
SOFTWARE
ILE A:106 , VAL A:109 , ALA A:113 , ILE A:114 , TRP A:117 , LEU D:39 , 78N D:1127
BINDING SITE FOR RESIDUE 78N A1126
18
BC9
SOFTWARE
TRP A:25 , LEU A:39 , LEU A:40 , 78M A:1122 , 78M A:1123 , CYS C:41 , TRP C:47 , TRP C:112 , 78M C:1122 , 78M C:1123
BINDING SITE FOR RESIDUE 78N C1126
19
CC1
SOFTWARE
CYS E:41 , VAL E:62 , GLU E:69 , TRP E:112 , HOH E:2005
BINDING SITE FOR RESIDUE 78N E1122
20
CC2
SOFTWARE
GLU B:34 , ALA B:37 , GLU B:69 , ILE B:105 , TRP B:112
BINDING SITE FOR RESIDUE 78N B1122
21
CC3
SOFTWARE
78M A:1124 , VAL B:109 , ILE B:114 , TRP B:117 , 78N B:1121
BINDING SITE FOR RESIDUE 78N B1123
22
CC4
SOFTWARE
ASP A:107 , ARG C:55 , MET C:63 , HOH C:2001
BINDING SITE FOR RESIDUE 78N C1127
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: DAGK_PROKAR (A:69-80,B:69-80,C:69-80,D:69-80,E:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DAGK_PROKAR
PS01069
Prokaryotic diacylglycerol kinase signature.
KDGL_ECOLI
70-81
6
A:69-80
B:69-80
C:69-80
D:69-80
E:69-80
F:69-80
[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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