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4D0E
Asym. Unit
Info
Asym.Unit (29 KB)
Biol.Unit 1 (24 KB)
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(1)
Title
:
HUMAN NOTCH1 EGF DOMAINS 11-13 MUTANT GLCNAC-FUCOSE DISACCHARIDE MODIFIED AT T466
Authors
:
P. Taylor, H. Takeuchi, D. Sheppard, C. Chillakuri, S. Lea, R. Haltiwan P. Handford
Date
:
25 Apr 14 (Deposition) - 21 May 14 (Release) - 04 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.61
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transcription, Metal-Binding, Transmembrane, Developmental, Notch Signaling Pathway, Differentiation, Phosphorylation, Egf-Like Domain, Regulation, Receptor, Activator, Ank Repeat, Signalling, Glycoprotein, Extracellular, Jagged, Nucleus, Membrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Taylor, H. Takeuchi, D. Sheppard, C. Chillakuri, S. M. Lea, R. S. Haltiwanger, P. A. Handford
Fringe-Mediated Extension Of O-Linked Fucose In The Ligand- Binding Region Of Notch1 Increases Binding To Mammalian Notch Ligands.
Proc. Natl. Acad. Sci. Usa V. 111 7290 2014
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-L-FUCOSE (FUCa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:452 , VAL A:453 , GLU A:455 , ASP A:469 , GLN A:470 , HOH A:2060 , HOH A:2066
BINDING SITE FOR RESIDUE CA A1531
2
AC2
SOFTWARE
ASN A:490 , THR A:491 , GLU A:493 , ASP A:507 , LYS A:508 , HOH A:2095
BINDING SITE FOR RESIDUE CA A1532
3
AC3
SOFTWARE
ASP A:412 , VAL A:413 , GLU A:415 , ASN A:431 , THR A:432 , SER A:435 , HOH A:2023
BINDING SITE FOR RESIDUE CA A1533
4
AC4
SOFTWARE
GLU A:511 , HIS A:523
BINDING SITE FOR RESIDUE CA A1535
5
AC5
SOFTWARE
ASP A:464 , THR A:466 , ILE A:477 , CYS A:478 , MET A:479 , ASP A:528 , HOH A:2018 , HOH A:2141
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 1 THROUGH FUC A1381 BOUND TO THR A 466
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071960 (C429R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071960
C
429
R
NOTC1_HUMAN
Disease (AOS5)
---
A
C
429
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 13)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (-|-|-|-|-|-|-|-|-|-|A:412-450|A:45...)
2: EGF_1 (-|-|-|-|-|-|-|-|-|-|A:438-449|A:47...)
3: EGF_2 (-|-|-|-|-|A:438-449|A:476-487|A:51...)
4: EGF_CA (-|-|-|-|A:412-438|A:452-476|A:490-...)
5: ASX_HYDROXYL (-|-|-|-|A:429-440|A:467-478|A:505-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
NOTC1_HUMAN
20-58
59-99
102-139
140-176
178-216
218-255
257-293
295-333
335-371
372-410
412-450
452-488
490-526
528-564
566-601
603-639
641-676
678-714
716-751
753-789
791-827
829-867
869-905
907-943
945-981
983-1019
1021-1057
1059-1095
1108-1143
1145-1181
1183-1219
1228-1265
1267-1305
1307-1346
1348-1384
1387-1426
4
-
-
-
-
-
-
-
-
-
-
A:412-450
A:452-488
A:490-526
A:528-528
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
EGF_1
PS00022
EGF-like domain signature 1.
NOTC1_HUMAN
46-57
87-98
127-138
164-175
204-215
243-254
281-292
321-332
359-370
398-409
438-449
476-487
514-525
552-563
589-600
627-638
664-675
739-750
777-788
815-826
855-866
893-904
931-942
969-980
1007-1018
1045-1056
1083-1094
1131-1142
1169-1180
1207-1218
1253-1264
1293-1304
1334-1345
1372-1383
1414-1425
3
-
-
-
-
-
-
-
-
-
-
A:438-449
A:476-487
A:514-525
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3
EGF_2
PS01186
EGF-like domain signature 2.
NOTC1_HUMAN
87-98
127-138
243-254
321-332
398-409
438-449
476-487
514-525
552-563
589-600
664-675
702-713
739-750
777-788
815-826
855-866
893-904
931-942
969-980
1007-1018
1045-1056
1083-1094
1131-1142
1169-1180
1253-1264
1334-1345
1372-1383
3
-
-
-
-
-
A:438-449
A:476-487
A:514-525
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
4
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
NOTC1_HUMAN
178-204
257-281
295-321
335-359
412-438
452-476
490-514
528-552
566-589
603-627
641-664
678-702
716-739
753-777
791-815
869-893
945-969
1021-1045
1183-1207
1221-1253
4
-
-
-
-
A:412-438
A:452-476
A:490-514
A:528-528
-
-
-
-
-
-
-
-
-
-
-
-
5
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
NOTC1_HUMAN
195-206
272-283
312-323
350-361
429-440
467-478
505-516
543-554
580-591
618-629
655-666
693-704
730-741
768-779
806-817
884-895
960-971
998-1009
1036-1047
1160-1171
1198-1209
1244-1255
3
-
-
-
-
A:429-440
A:467-478
A:505-516
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.7 (A:412-419)
Exon 1.8 (A:419-481)
Exon 1.9 (A:481-519)
Exon 1.10 (A:519-533)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000277541
1
ENSE00001247593
chr9:
139440314-139440178
137
NOTC1_HUMAN
1-21
21
0
-
-
1.2
ENST00000277541
2
ENSE00001124718
chr9:
139438554-139438476
79
NOTC1_HUMAN
21-47
27
0
-
-
1.3a
ENST00000277541
3a
ENSE00001042401
chr9:
139418431-139418169
263
NOTC1_HUMAN
47-135
89
0
-
-
1.4a
ENST00000277541
4a
ENSE00000985020
chr9:
139417640-139417302
339
NOTC1_HUMAN
135-248
114
0
-
-
1.5
ENST00000277541
5
ENSE00001378880
chr9:
139414017-139413895
123
NOTC1_HUMAN
248-289
42
0
-
-
1.6
ENST00000277541
6
ENSE00000985022
chr9:
139413276-139413043
234
NOTC1_HUMAN
289-367
79
0
-
-
1.7
ENST00000277541
7
ENSE00000985023
chr9:
139412744-139412589
156
NOTC1_HUMAN
367-419
53
1
A:412-419
8
1.8
ENST00000277541
8
ENSE00000985024
chr9:
139412389-139412204
186
NOTC1_HUMAN
419-481
63
1
A:419-481
63
1.9
ENST00000277541
9
ENSE00000985025
chr9:
139411837-139411724
114
NOTC1_HUMAN
481-519
39
1
A:481-519
39
1.10
ENST00000277541
10
ENSE00000985026
chr9:
139410546-139410433
114
NOTC1_HUMAN
519-557
39
1
A:519-533
15
1.11
ENST00000277541
11
ENSE00000985027
chr9:
139410168-139409935
234
NOTC1_HUMAN
557-635
79
0
-
-
1.12
ENST00000277541
12
ENSE00000985028
chr9:
139409852-139409742
111
NOTC1_HUMAN
635-672
38
0
-
-
1.13
ENST00000277541
13
ENSE00000985029
chr9:
139409154-139408962
193
NOTC1_HUMAN
672-736
65
0
-
-
1.14
ENST00000277541
14
ENSE00000985030
chr9:
139407989-139407844
146
NOTC1_HUMAN
736-785
50
0
-
-
1.15
ENST00000277541
15
ENSE00000985031
chr9:
139407586-139407473
114
NOTC1_HUMAN
785-823
39
0
-
-
1.16
ENST00000277541
16
ENSE00000985032
chr9:
139405723-139405604
120
NOTC1_HUMAN
823-863
41
0
-
-
1.17
ENST00000277541
17
ENSE00000985033
chr9:
139405257-139405105
153
NOTC1_HUMAN
863-914
52
0
-
-
1.18
ENST00000277541
18
ENSE00000985034
chr9:
139404413-139404185
229
NOTC1_HUMAN
914-990
77
0
-
-
1.19
ENST00000277541
19
ENSE00000985035
chr9:
139403523-139403322
202
NOTC1_HUMAN
990-1057
68
0
-
-
1.20
ENST00000277541
20
ENSE00000985036
chr9:
139402837-139402684
154
NOTC1_HUMAN
1058-1109
52
0
-
-
1.21
ENST00000277541
21
ENSE00000985037
chr9:
139402591-139402407
185
NOTC1_HUMAN
1109-1170
62
0
-
-
1.22
ENST00000277541
22
ENSE00000985038
chr9:
139401889-139401757
133
NOTC1_HUMAN
1171-1215
45
0
-
-
1.23
ENST00000277541
23
ENSE00000985039
chr9:
139401425-139401168
258
NOTC1_HUMAN
1215-1301
87
0
-
-
1.24
ENST00000277541
24
ENSE00000985040
chr9:
139401091-139400979
113
NOTC1_HUMAN
1301-1338
38
0
-
-
1.25
ENST00000277541
25
ENSE00000985041
chr9:
139400333-139399762
572
NOTC1_HUMAN
1339-1529
191
0
-
-
1.26a
ENST00000277541
26a
ENSE00000985042
chr9:
139399556-139399125
432
NOTC1_HUMAN
1529-1673
145
0
-
-
1.27
ENST00000277541
27
ENSE00001124572
chr9:
139397782-139397634
149
NOTC1_HUMAN
1673-1723
51
0
-
-
1.28b
ENST00000277541
28b
ENSE00000985044
chr9:
139396940-139396724
217
NOTC1_HUMAN
1723-1795
73
0
-
-
1.29
ENST00000277541
29
ENSE00000985045
chr9:
139396540-139396453
88
NOTC1_HUMAN
1795-1824
30
0
-
-
1.30
ENST00000277541
30
ENSE00000985046
chr9:
139396365-139396200
166
NOTC1_HUMAN
1825-1880
56
0
-
-
1.31
ENST00000277541
31
ENSE00000985047
chr9:
139395299-139395004
296
NOTC1_HUMAN
1880-1978
99
0
-
-
1.32
ENST00000277541
32
ENSE00000985048
chr9:
139393711-139393564
148
NOTC1_HUMAN
1979-2028
50
0
-
-
1.33
ENST00000277541
33
ENSE00000985049
chr9:
139393448-139393351
98
NOTC1_HUMAN
2028-2060
33
0
-
-
1.34
ENST00000277541
34
ENSE00001247584
chr9:
139392010-139388896
3115
NOTC1_HUMAN
2061-2555
495
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asym.Unit (29 KB)
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