PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4CXS
Asym. Unit
Info
Asym.Unit (178 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (87 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
G4 MUTANT OF PAS, ARYLSULFATASE FROM PSEUDOMONAS AERUGINOSA, IN COMPLEX WITH PHENYLPHOSPHONIC ACID
Authors
:
C. M. Miton, S. Jonas, M. F. Mohammed, G. Fischer, B. V. Loo, B. Kintses, M N. Tokuriki, F. Hollfelder
Date
:
08 Apr 14 (Deposition) - 13 May 15 (Release) - 13 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Catalytic Promiscuity, Directed Evolution, Neutral Drift, Sulfatase, Superfamily
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Miton, S. Jonas, M. F. Mohammed, G. Fischer, B. V. Loo, B. Kintses
G4 Mutant Of Pas, Arylsulfatase From Pseudomonas Aeruginosa, I
To Be Published
[
close entry info
]
Hetero Components
(4, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 3,3-DIHYDROXY L-ALANINE (DDZa)
2b: 3,3-DIHYDROXY L-ALANINE (DDZb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: PHENYLPHOSPHONIC ACID (SV7a)
4b: PHENYLPHOSPHONIC ACID (SV7b)
4c: PHENYLPHOSPHONIC ACID (SV7c)
4d: PHENYLPHOSPHONIC ACID (SV7d)
4e: PHENYLPHOSPHONIC ACID (SV7e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
DDZ
2
Mod. Amino Acid
3,3-DIHYDROXY L-ALANINE
3
SO4
2
Ligand/Ion
SULFATE ION
4
SV7
5
Ligand/Ion
PHENYLPHOSPHONIC ACID
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:13 , ASP A:14 , DDZ A:51 , ASP A:317 , ASN A:318
BINDING SITE FOR RESIDUE CA A1529
2
AC2
SOFTWARE
HIS A:452 , THR A:456 , HOH A:2107 , ASN B:455
BINDING SITE FOR RESIDUE SO4 A1530
3
AC3
SOFTWARE
DDZ A:51 , MET A:72 , LYS A:113 , HIS A:115 , GLY A:138 , THR A:160 , HIS A:211 , LYS A:375
BINDING SITE FOR RESIDUE SV7 A1531
4
AC4
SOFTWARE
LYS A:275 , VAL A:357 , TRP A:358
BINDING SITE FOR RESIDUE SV7 A1532
5
AC5
SOFTWARE
ASP B:13 , ASP B:14 , DDZ B:51 , ASP B:317 , ASN B:318
BINDING SITE FOR RESIDUE CA B1529
6
AC6
SOFTWARE
ASN A:455 , ARG B:438 , HIS B:452 , THR B:456 , HOH B:2100 , HOH B:2102
BINDING SITE FOR RESIDUE SO4 B1530
7
AC7
SOFTWARE
ASP A:229 , TRP A:265 , ARG A:273 , ARG B:236 , GLN B:237 , LEU B:240 , LYS B:244 , HOH B:2067
BINDING SITE FOR RESIDUE SV7 B1531
8
AC8
SOFTWARE
ARG A:236 , GLN A:237 , LYS A:244 , HOH A:2070 , ASP B:229 , TRP B:265 , ARG B:273
BINDING SITE FOR RESIDUE SV7 B1532
9
AC9
SOFTWARE
DDZ B:51 , MET B:72 , HIS B:115 , GLY B:138 , ALA B:139 , THR B:160 , HIS B:211 , LYS B:375
BINDING SITE FOR RESIDUE SV7 B1533
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (178 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (87 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4CXS
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help