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4CXP
Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (118 KB)
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(1)
Title
:
STRUCTURE OF BIFUNCTIONAL ENDONUCLEASE (ATBFN2) FROM ARABIDOPSIS THALIANA IN COMPLEX WITH SULFATE
Authors
:
T. -F. Yu, M. Maestre-Reyna, C. -Y. Ko, T. -P. Ko, Y. -J. Sun, T. -Y. Lin, J. A. H. -J. Wang
Date
:
08 Apr 14 (Deposition) - 23 Jul 14 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.22
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Endonucleases, Glycosylation, Ssdna Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Yu, M. Maestre-Reyna, C. Ko, T. Ko, Y. Sun, T. Lin, J. Shaw, A. H. Wang
Structural Insights Of The Ssdna Binding Site In The Multifunctional Endonuclease Atbfn2 From Arabidopsis Thaliana.
Plos One V. 9 05821 2014
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Hetero Components
(7, 23)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
3a: ALPHA-L-FUCOSE (FUCa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
BMA
3
Ligand/Ion
BETA-D-MANNOSE
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
3
Ligand/Ion
SULFATE ION
7
ZN
3
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:45 , HIS A:58 , HIS A:120 , ASP A:124 , ZN A:933 , SO4 A:961
BINDING SITE FOR RESIDUE ZN A 931
02
AC2
SOFTWARE
HIS A:130 , HIS A:154 , ASP A:158 , SO4 A:961 , HOH A:2260
BINDING SITE FOR RESIDUE ZN A 932
03
AC3
SOFTWARE
TRP A:1 , HIS A:6 , ASP A:124 , ZN A:931 , SO4 A:961
BINDING SITE FOR RESIDUE ZN A 933
04
AC4
SOFTWARE
GLU A:27 , LEU A:28 , LEU A:29 , PRO A:30 , THR A:112 , NAG A:831 , NAG A:832 , FUC A:835 , HOH A:2256 , HOH A:2464
BINDING SITE FOR RESIDUE 1PE A 960
05
AC5
SOFTWARE
TRP A:1 , HIS A:6 , ASP A:45 , LYS A:48 , HIS A:58 , HIS A:120 , ASP A:124 , HIS A:130 , ASP A:158 , ZN A:931 , ZN A:932 , ZN A:933 , HOH A:2001 , HOH A:2121 , HOH A:2123 , HOH A:2260
BINDING SITE FOR RESIDUE SO4 A 961
06
AC6
SOFTWARE
ARG A:149 , LYS A:150 , HOH A:2279 , HOH A:2287 , HOH A:2292
BINDING SITE FOR RESIDUE SO4 A 962
07
AC7
SOFTWARE
TRP A:43 , ARG A:46 , ARG A:50 , NAG A:832 , HOH A:2115 , HOH A:2117 , HOH A:2466 , HOH A:2495
BINDING SITE FOR RESIDUE SO4 A 963
08
AC8
SOFTWARE
GLU A:34 , GLY A:35 , ASP A:36 , TRP A:53 , LEU A:57 , GLY A:82 , ARG A:83 , ALA A:88 , ASN A:91 , TYR A:92 , GLN A:95 , GLN A:108 , ASP A:179 , LYS A:182 , LYS A:183 , GLY A:224 , HOH A:2229 , HOH A:2230 , HOH A:2257 , HOH A:2330 , HOH A:2335 , HOH A:2387 , HOH A:2437 , HOH A:2438 , HOH A:2439 , HOH A:2441 , HOH A:2442 , HOH A:2444 , HOH A:2445 , HOH A:2446 , HOH A:2447 , HOH A:2448 , HOH A:2449 , HOH A:2450 , HOH A:2452 , HOH A:2453 , HOH A:2454 , HOH A:2458 , HOH A:2460 , HOH A:2461 , HOH A:2463
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 801 THROUGH MAN A 808 BOUND TO ASN A 91
09
AC9
SOFTWARE
ARG A:16 , PRO A:30 , ASN A:110 , GLU A:113 , GLU A:197 , 1PE A:960 , SO4 A:963 , HOH A:2103 , HOH A:2464 , HOH A:2465 , HOH A:2466 , HOH A:2468 , HOH A:2469 , HOH A:2470 , HOH A:2471 , HOH A:2473 , HOH A:2474 , HOH A:2475 , HOH A:2476 , HOH A:2478 , HOH A:2479
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 831 THROUGH FUC A 835 BOUND TO ASN A 110
10
BC1
SOFTWARE
SER A:67 , GLN A:69 , TYR A:170 , LEU A:181 , ASN A:184 , TRP A:189 , PRO A:241 , TYR A:244 , HOH A:2315 , HOH A:2345 , HOH A:2480 , HOH A:2481 , HOH A:2483 , HOH A:2484 , HOH A:2486 , HOH A:2487 , HOH A:2488 , HOH A:2489 , HOH A:2491
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 861 THROUGH BMA A 863 BOUND TO ASN A 184
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Chain A
Asymmetric Unit 1
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