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4CXH
Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (227 KB)
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(1)
Title
:
REGULATION OF THE MAMMALIAN ELONGATION CYCLE BY 40S SUBUNIT ROLLING: A EUKARYOTIC-SPECIFIC RIBOSOME REARRANGEMENT
Authors
:
T. V. Budkevich, J. Giesebrecht, E. Behrmann, J. Loerke, D. J. F. Ramrat T. Mielke, J. Ismer, P. Hildebrand, C. -S. Tung, K. H. Nierhaus, K. Y. Sanbonmatsu, C. M. T. Spahn
Date
:
07 Apr 14 (Deposition) - 16 Jul 14 (Release) - 16 Jul 14 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
8.90
Chains
:
Asym. Unit : A,X,Y,a,b,c,x,1,2
Biol. Unit 1: A,X,Y,a,b,c,x,1,2 (1x)
Keywords
:
Translation, Mammalian 80S Ribosome, Elongation Cycle, Trna Selection, Eukaryotic Ternary Complex, Elongation Factor Eef1A
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. V. Budkevich, J. Giesebrecht, E. Behrmann, J. Loerke, D. J. Ramrath T. Mielke, J. Ismer, P. W. Hildebrand, C. S. Tung, K. H. Nierhaus, K. Y. Sanbonmatsu, C. M. Spahn
Regulation Of The Mammalian Elongation Cycle By Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement.
Cell(Cambridge, Mass. ) V. 158 121 2014
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Hetero Components
(11, 12)
Info
All Hetero Components
01a: 6-HYDRO-1-METHYLADENOSINE-5'-MONOP... (1MAa)
02a: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGa)
03a: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCa)
04a: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUa)
05a: 7N-METHYL-8-HYDROGUANOSINE-5'-MONO... (7MGa)
06a: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ua)
06b: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ub)
07a: N2-DIMETHYLGUANOSINE-5'-MONOPHOSPH... (M2Ga)
08a: 2-METHYLTHIO-N6-ISOPENTENYL-ADENOS... (MIAa)
09a: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCa)
10a: PHENYLALANINE (PHEa)
11a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
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No.
Name
Count
Type
Full Name
1
1MA
1
Mod. Nucleotide
6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2
2MG
1
Mod. Nucleotide
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3
5MC
1
Mod. Nucleotide
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4
5MU
1
Mod. Nucleotide
5-METHYLURIDINE 5'-MONOPHOSPHATE
5
7MG
1
Mod. Nucleotide
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6
H2U
2
Mod. Nucleotide
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7
M2G
1
Mod. Nucleotide
N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8
MIA
1
Mod. Nucleotide
2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE
9
OMC
1
Mod. Nucleotide
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
10
PHE
1
Mod. Amino Acid
PHENYLALANINE
11
PSU
1
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:241 , VAL A:251 , GLY A:296 , A Y:76
BINDING SITE FOR RESIDUE PHE Y 77
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_079133 (R67K, chain X, )
2: VAR_079134 (F120I, chain X, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_079133
R
67
K
RS23_HUMAN
---
---
X
R
67
K
2
UniProt
VAR_079134
F
120
I
RS23_HUMAN
---
---
X
F
120
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_S12 (X:60-67)
2: G_TR_1 (A:60-75)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S12
PS00055
Ribosomal protein S12 signature.
RS23_HUMAN
60-67
1
X:60-67
2
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EF1A_AERPE
60-75
1
A:60-75
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Exons
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (235 KB)
Header - Asym.Unit
Biol.Unit 1 (227 KB)
Header - Biol.Unit 1
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